Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CRT55_RS06590 Genome accession   NZ_CP024056
Coordinates   1079454..1079969 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SMN197SH3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074454..1084969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT55_RS06545 (CRT55_06510) csrA 1075041..1075226 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CRT55_RS06575 (CRT55_06540) yqaB 1076684..1077250 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CRT55_RS06580 (CRT55_06545) yqaA 1077247..1077675 (+) 429 WP_001287457.1 YqaA family protein -
  CRT55_RS06585 (CRT55_06550) gshA 1077748..1079304 (+) 1557 WP_062881990.1 glutamate--cysteine ligase -
  CRT55_RS06590 (CRT55_06555) luxS 1079454..1079969 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CRT55_RS06595 (CRT55_06560) emrB 1080033..1081571 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CRT55_RS06600 (CRT55_06565) emrA 1081588..1082760 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CRT55_RS06605 (CRT55_06570) emrR 1082887..1083417 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CRT55_RS06610 (CRT55_06575) ygaH 1083508..1083843 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CRT55_RS06615 (CRT55_06580) ygaZ 1083833..1084570 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=209905 CRT55_RS06590 WP_001130211.1 1079454..1079969(+) (luxS) [Escherichia coli strain SMN197SH3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=209905 CRT55_RS06590 WP_001130211.1 1079454..1079969(+) (luxS) [Escherichia coli strain SMN197SH3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment