Detailed information NTG0209902

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: BJD10_RS20265
• Genome accession: NZ_CP018728
• Coordinates: 4528298..4529356 (-)
• Length: 352 a.a.
• NCBI ID: WP_043909467.1
• Uniprot ID: A0A0G8KJ77
• Organism: Xanthomonas hortorum pv. gardneri strain JS749-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4523298..4534356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD10_RS20245 (BJD10_20245)	-	4524403..4526313 (-)	1911	WP_043909466.1	type IV pilus secretin PilQ family protein	-
BJD10_RS20250 (BJD10_20250)	-	4526333..4526866 (-)	534	WP_006451353.1	pilus assembly protein PilP	-
BJD10_RS20255 (BJD10_20255)	-	4526863..4527528 (-)	666	WP_006451354.1	type 4a pilus biogenesis protein PilO	-
BJD10_RS20260 (BJD10_20260)	-	4527525..4528298 (-)	774	WP_006451355.1	PilN domain-containing protein	-
BJD10_RS20265 (BJD10_20265)	comM	4528298..4529356 (-)	1059	WP_043909467.1	pilus assembly protein PilM	Machinery gene
BJD10_RS20270 (BJD10_20270)	-	4529572..4531998 (+)	2427	WP_006451357.1	penicillin-binding protein 1A	-
BJD10_RS25785	-	4532112..4532318 (-)	207	WP_228996929.1	hypothetical protein	-
BJD10_RS20275 (BJD10_20275)	-	4532289..4532861 (+)	573	WP_228996930.1	hypothetical protein	-
BJD10_RS20280 (BJD10_20280)	-	4532965..4534254 (-)	1290	WP_006451360.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.24 Da
• Isoelectric Point: 4.3882

>NTDB_id=209902 BJD10_RS20265 WP_043909467.1 4528298..4529356(-) (comM) [Xanthomonas hortorum pv. gardneri strain JS749-3]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVDHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=209902 BJD10_RS20265 WP_043909467.1 4528298..4529356(-) (comM) [Xanthomonas hortorum pv. gardneri strain JS749-3]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
ACGTAGCGGGAATCGTTTTCGCGTGGATCATTACGCGGTGGAACCGTTGCCGCCGAACGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGTTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGTGATATGGAAGCCCAGGTCGA
ACTCGAGGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAAGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCTGCGCTGGAACTCGGT
GGCCTGGTTGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCGTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
GGCTGCCGATGCAGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGTCAGGGCGGGTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAAGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTTGCA
CAGATGACGCTCGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A0G8KJ77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
comM	Acinetobacter baylyi ADP1	50.712	99.716	0.506
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472