Detailed information NTG0209902

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRT55_RS06280
• Genome accession: NZ_CP024056
• Coordinates: 1021935..1022927 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SMN197SH3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1016935..1027927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRT55_RS06250 (CRT55_06210)	ispD	1016996..1017706 (+)	711	WP_000246140.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CRT55_RS06255 (CRT55_06215)	ispF	1017706..1018185 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRT55_RS06260 (CRT55_06220)	truD	1018182..1019231 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
CRT55_RS06265 (CRT55_06225)	surE	1019212..1019973 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRT55_RS06270 (CRT55_06230)	pcm	1019967..1020593 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRT55_RS06275 (CRT55_06235)	nlpD	1020778..1021872 (+)	1095	WP_306308431.1	murein hydrolase activator NlpD	-
CRT55_RS06280 (CRT55_06240)	rpoS	1021935..1022927 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRT55_RS06285 (CRT55_06245)	-	1023048..1023455 (-)	408	WP_001208074.1	MarR family transcriptional regulator	-
CRT55_RS06290 (CRT55_06250)	-	1023602..1024195 (+)	594	WP_024226284.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CRT55_RS06295 (CRT55_06255)	-	1024195..1025622 (+)	1428	WP_062881976.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CRT55_RS06300 (CRT55_06260)	-	1025633..1025869 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CRT55_RS06305 (CRT55_06265)	ygbN	1025909..1027273 (-)	1365	WP_062881977.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=209902 CRT55_RS06280 WP_000081550.1 1021935..1022927(+) (rpoS) [Escherichia coli strain SMN197SH3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=209902 CRT55_RS06280 WP_000081550.1 1021935..1022927(+) (rpoS) [Escherichia coli strain SMN197SH3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715