Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   BBX44_RS32655 Genome accession   NZ_CP024024
Coordinates   6942318..6942647 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PARM801     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6937318..6947647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS32635 - 6937363..6938382 (+) 1020 WP_003113413.1 glycosyltransferase family 4 protein -
  BBX44_RS32640 - 6938460..6939564 (+) 1105 Protein_6454 IS3 family transposase -
  BBX44_RS32645 - 6939621..6939815 (+) 195 WP_124127713.1 hypothetical protein -
  BBX44_RS32650 - 6940130..6942127 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  BBX44_RS32655 comEA/comE1 6942318..6942647 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  BBX44_RS32665 - 6942864..6944060 (-) 1197 WP_121496217.1 amino acid aminotransferase -
  BBX44_RS32670 uvrB 6944248..6946260 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=209780 BBX44_RS32655 WP_003104586.1 6942318..6942647(+) (comEA/comE1) [Pseudomonas aeruginosa strain PARM801]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=209780 BBX44_RS32655 WP_003104586.1 6942318..6942647(+) (comEA/comE1) [Pseudomonas aeruginosa strain PARM801]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment