Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   BBX44_RS30265 Genome accession   NZ_CP024024
Coordinates   6431740..6432744 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain PARM801     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6426740..6437744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS30235 fghA 6426832..6427683 (+) 852 WP_003113869.1 S-formylglutathione hydrolase -
  BBX44_RS30240 ispF 6427754..6428227 (+) 474 WP_003098560.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BBX44_RS30245 truD 6428224..6429291 (+) 1068 WP_003098559.1 tRNA pseudouridine(13) synthase TruD -
  BBX44_RS30250 surE 6429279..6430028 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  BBX44_RS30255 - 6430061..6430696 (+) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  BBX44_RS30260 - 6430742..6431635 (+) 894 WP_003115226.1 peptidoglycan DD-metalloendopeptidase family protein -
  BBX44_RS30265 rpoS 6431740..6432744 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  BBX44_RS30270 fdxA 6433171..6433494 (-) 324 WP_003092272.1 ferredoxin FdxA -
  BBX44_RS30275 mutS 6433561..6436128 (-) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  BBX44_RS30280 - 6436254..6437261 (-) 1008 WP_049272111.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=209775 BBX44_RS30265 WP_003113871.1 6431740..6432744(+) (rpoS) [Pseudomonas aeruginosa strain PARM801]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=209775 BBX44_RS30265 WP_003113871.1 6431740..6432744(+) (rpoS) [Pseudomonas aeruginosa strain PARM801]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653