Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSU_12430 Genome accession   NC_000964
Coordinates   1315869..1317005 (+) Length   378 a.a.
NCBI ID   NP_389125.1    Uniprot ID   Q00828
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310869..1322005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_12390 (BSU12390) uxaA 1311319..1312812 (+) 1494 NP_389121.2 altronate dehydratase -
  BSU_12400 (BSU12400) yjnA 1312851..1313615 (-) 765 NP_389122.1 putative permease -
  BSU_12410 (BSU12410) yjoA 1313840..1314304 (-) 465 NP_389123.1 putative DNA-binding protein -
  BSU_12420 (BSU12420) yjoB 1314453..1315724 (+) 1272 NP_389124.1 informational ATPase possibly involved in protein degradation -
  BSU_12430 (BSU12430) rapC 1315869..1317005 (+) 1137 NP_389125.1 response regulator aspartate phosphatase Regulator
  BSU_12440 (BSU12440) phrA 1316995..1317129 (+) 135 NP_389126.1 secreted inhibitor of the activity of phosphatase RapA (quorum sensing) -
  BSU_12450 (BSU12450) yjpA 1317157..1317414 (-) 258 NP_389127.2 putative enzyme -
  BSU_12460 (BSU12460) xlyB 1317535..1318488 (+) 954 NP_389128.1 phage PBSX; N-acetylmuramoyl-L-alanine amidase -
  BSU_12470 (BSU12470) yjqA 1318528..1318905 (-) 378 NP_389129.1 phage PBSX; conserved hypothetical protein -
  BSU_12480 (BSU12480) pghB 1319011..1319613 (+) 603 NP_389130.1 phage PBSX; gamma-polyglutamate hydrolase -
  BSU_12490 (BSU12490) xpdC 1319690..1320526 (+) 837 NP_389131.2 phage PBSX; manganese-containing peroxidase -
  BSU_12500 (BSU12500) xkdA 1320570..1321166 (-) 597 NP_389132.3 phage PBSX; putative peptidase -
  BSU_12510 (BSU12510) xre 1321329..1321670 (-) 342 NP_389133.1 phage PBSX transcriptional regulator -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=20974 BSU_12430 NP_389125.1 1315869..1317005(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=20974 BSU_12430 NP_389125.1 1315869..1317005(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418

Multiple sequence alignment