Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   BBX44_RS20345 Genome accession   NZ_CP024024
Coordinates   4316986..4317510 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PARM801     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4311986..4322510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS20330 aroB 4313102..4314208 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  BBX44_RS20335 aroK 4314258..4314776 (-) 519 WP_003095833.1 shikimate kinase AroK -
  BBX44_RS20340 pilQ 4314788..4316932 (-) 2145 WP_049272019.1 type 4a pilus secretin PilQ Machinery gene
  BBX44_RS20345 comL/pilP 4316986..4317510 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  BBX44_RS20350 pilO 4317507..4318130 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  BBX44_RS20355 pilN 4318127..4318723 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  BBX44_RS20360 pilM 4318723..4319787 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  BBX44_RS20365 - 4319972..4322443 (+) 2472 WP_049272020.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=209734 BBX44_RS20345 WP_003095836.1 4316986..4317510(-) (comL/pilP) [Pseudomonas aeruginosa strain PARM801]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=209734 BBX44_RS20345 WP_003095836.1 4316986..4317510(-) (comL/pilP) [Pseudomonas aeruginosa strain PARM801]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362