Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   BBX44_RS17700 Genome accession   NZ_CP024024
Coordinates   3727575..3728132 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   G3XD84
Organism   Pseudomonas aeruginosa strain PARM801     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3722575..3733132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS17680 pilR 3723851..3725188 (+) 1338 WP_003110427.1 two-component system response regulator PilR -
  BBX44_RS17685 thiO 3725234..3726328 (-) 1095 WP_049270875.1 glycine oxidase ThiO -
  BBX44_RS17690 - 3726463..3726972 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  BBX44_RS17695 - 3727078..3727584 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  BBX44_RS17700 pilV 3727575..3728132 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  BBX44_RS17705 pilW 3728129..3728953 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  BBX44_RS17710 pilX 3728950..3729537 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  BBX44_RS17715 pilY1 3729549..3733040 (+) 3492 WP_003145982.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=209727 BBX44_RS17700 WP_003119423.1 3727575..3728132(+) (pilV) [Pseudomonas aeruginosa strain PARM801]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=209727 BBX44_RS17700 WP_003119423.1 3727575..3728132(+) (pilV) [Pseudomonas aeruginosa strain PARM801]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995