Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BBX44_RS15760 Genome accession   NZ_CP024024
Coordinates   3354164..3355606 (-) Length   480 a.a.
NCBI ID   WP_121496196.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM801     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3349164..3360606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS15730 - 3349490..3350605 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  BBX44_RS15735 - 3350598..3351359 (+) 762 WP_049271432.1 DUF2334 domain-containing protein -
  BBX44_RS15740 - 3351356..3352357 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  BBX44_RS15745 - 3352332..3352544 (-) 213 WP_003101176.1 hypothetical protein -
  BBX44_RS15750 purU 3352594..3353445 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  BBX44_RS15755 mvaT 3353705..3354079 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  BBX44_RS15760 sbcB 3354164..3355606 (-) 1443 WP_121496196.1 exodeoxyribonuclease I Machinery gene
  BBX44_RS15765 - 3355831..3356568 (+) 738 WP_003101171.1 hypothetical protein -
  BBX44_RS15770 - 3356606..3357403 (+) 798 WP_003120853.1 RDD family protein -
  BBX44_RS15775 - 3357400..3358380 (+) 981 WP_049271428.1 stage II sporulation protein M -
  BBX44_RS15780 - 3358367..3359938 (+) 1572 WP_003161496.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55402.60 Da        Isoelectric Point: 5.5378

>NTDB_id=209715 BBX44_RS15760 WP_121496196.1 3354164..3355606(-) (sbcB) [Pseudomonas aeruginosa strain PARM801]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVAL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRHRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNAAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=209715 BBX44_RS15760 WP_121496196.1 3354164..3355606(-) (sbcB) [Pseudomonas aeruginosa strain PARM801]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGCCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCATCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGCAGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.176

88.542

0.435

Multiple sequence alignment