Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BBX44_RS04215 Genome accession   NZ_CP024024
Coordinates   850936..851445 (-) Length   169 a.a.
NCBI ID   WP_121496454.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 845936..856445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS04185 - 845955..846452 (+) 498 WP_008643209.1 arsenate reductase ArsC -
  BBX44_RS04190 arsD 846494..846853 (+) 360 WP_023083123.1 arsenite efflux transporter metallochaperone ArsD -
  BBX44_RS04195 arsA 846867..848633 (+) 1767 WP_121496453.1 arsenical pump-driving ATPase -
  BBX44_RS04200 arsB 848663..849742 (+) 1080 WP_021204056.1 ACR3 family arsenite efflux transporter -
  BBX44_RS04205 arsC 849757..850179 (+) 423 WP_043154877.1 arsenate reductase (glutaredoxin) -
  BBX44_RS04210 arsH 850172..850894 (+) 723 WP_031668144.1 arsenical resistance protein ArsH -
  BBX44_RS04215 radC 850936..851445 (-) 510 WP_121496454.1 DNA repair protein RadC Machinery gene
  BBX44_RS04220 - 851786..852850 (-) 1065 WP_023083127.1 PDDEXK nuclease domain-containing protein -
  BBX44_RS04225 - 852847..854049 (-) 1203 WP_023083128.1 site-specific integrase -
  BBX44_RS04230 oprN 854302..855720 (-) 1419 WP_003113303.1 multidrug efflux RND transporter outer membrane subunit OprN -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18504.11 Da        Isoelectric Point: 6.3365

>NTDB_id=209693 BBX44_RS04215 WP_121496454.1 850936..851445(-) (radC) [Pseudomonas aeruginosa strain PARM801]
MSQLSFSSFDASLMVRDAQGRYLLATADPILEAARQAIEYKMQRGASFSSPVAVKEYLSAKLAGFEHEVFAVLFLDTQHR
LIEYSELFRGTIDSASVYPRELVKEALRLNAAAVIVSHNHPSGNPEPSGADKVLTQRLREALALVDVRTLDHIIVAGGST
ISFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=209693 BBX44_RS04215 WP_121496454.1 850936..851445(-) (radC) [Pseudomonas aeruginosa strain PARM801]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGCCTCGCTGATGGTGCGCGATGCACAGGGCCGCTACCTGCTGGCGACGGC
CGACCCAATTCTGGAGGCCGCACGCCAGGCCATCGAGTACAAGATGCAGCGCGGTGCGTCGTTCAGTTCGCCGGTGGCGG
TCAAGGAGTACCTGAGCGCCAAGTTGGCTGGTTTCGAGCATGAAGTCTTCGCTGTGCTGTTCTTGGATACGCAGCATCGC
CTGATCGAATACAGCGAGCTTTTCCGAGGCACCATCGACAGTGCATCGGTGTATCCACGCGAGCTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCAGCGGTCATCGTTTCGCACAACCATCCGAGCGGCAACCCCGAACCGAGCGGCGCCGACAAGGTAC
TGACCCAGCGGCTCAGGGAGGCGCTGGCGCTGGTGGATGTCCGCACGCTGGATCACATCATCGTGGCGGGTGGCAGCACC
ATATCCTTCGCCGAACGCGGTCTGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.429

82.84

0.385

Multiple sequence alignment