Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BBX44_RS01380 Genome accession   NZ_CP024024
Coordinates   278221..278727 (-) Length   168 a.a.
NCBI ID   WP_196694615.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 273221..283727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS01350 - 273630..273872 (-) 243 WP_203448119.1 hypothetical protein -
  BBX44_RS01355 parA 273869..274507 (-) 639 WP_203448122.1 ParA family partition ATPase -
  BBX44_RS01360 - 274752..275579 (-) 828 WP_203448124.1 replication initiator protein A -
  BBX44_RS01365 - 275591..275872 (-) 282 WP_203448126.1 helix-turn-helix domain-containing protein -
  BBX44_RS01370 - 276475..276987 (-) 513 WP_203448128.1 antirestriction protein ArdA -
  BBX44_RS01375 - 277379..278182 (+) 804 WP_196694614.1 NYN domain-containing protein -
  BBX44_RS01380 radC 278221..278727 (-) 507 WP_196694615.1 DNA repair protein RadC Machinery gene
  BBX44_RS01385 - 279030..279326 (-) 297 WP_196694616.1 LasR-specific antiactivator QslA -
  BBX44_RS01390 - 279323..279592 (-) 270 WP_196694617.1 hypothetical protein -
  BBX44_RS01395 - 280542..281741 (-) 1200 WP_196694618.1 methyl-accepting chemotaxis protein -
  BBX44_RS01400 - 281818..282186 (-) 369 WP_196694619.1 c-type cytochrome -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18392.07 Da        Isoelectric Point: 6.3338

>NTDB_id=209683 BBX44_RS01380 WP_196694615.1 278221..278727(-) (radC) [Pseudomonas aeruginosa strain PARM801]
MSQPVHAIAATLLVRDDEGCYLPASADQILEAARQAIDCKLQRGASFTSPDVVKDYLRAKLAGYEREVFAVLFLDAKHRL
IQYIELFQGTIDSTAVYPREVVKEALRLNAAAAIIAHNHPSGNPEPSEADKSITRRIKEALALVDVRALDHIIIAGTQSV
SFAERGLI

Nucleotide


Download         Length: 507 bp        

>NTDB_id=209683 BBX44_RS01380 WP_196694615.1 278221..278727(-) (radC) [Pseudomonas aeruginosa strain PARM801]
ATGTCGCAACCTGTCCACGCAATCGCCGCCACCCTGCTCGTACGTGACGATGAAGGATGCTATCTGCCAGCATCTGCCGA
TCAGATCCTGGAAGCCGCGCGCCAGGCCATCGATTGCAAGCTGCAGCGTGGTGCCAGCTTCACTTCGCCGGATGTGGTCA
AGGACTACCTTCGCGCCAAGCTGGCCGGCTACGAGCGCGAGGTGTTCGCCGTATTGTTCCTGGACGCCAAGCATCGACTG
ATCCAGTACATCGAGCTCTTCCAGGGCACCATCGACAGCACAGCGGTCTATCCACGTGAGGTCGTCAAGGAAGCACTGCG
CCTGAATGCAGCCGCAGCGATCATCGCTCACAACCATCCCAGCGGTAATCCGGAGCCTAGTGAAGCGGACAAGTCGATCA
CCCGGCGCATCAAGGAAGCATTGGCGCTGGTGGACGTGCGCGCCTTGGATCACATCATCATCGCGGGGACGCAGTCAGTC
TCTTTCGCGGAGCGAGGGCTCATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.622

70.833

0.387