Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BG259_RS22125 Genome accession   NZ_CP018681
Coordinates   1117026..1118207 (+) Length   393 a.a.
NCBI ID   WP_026000191.1    Uniprot ID   A0A1E3E250
Organism   Vibrio harveyi strain QT520     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112026..1123207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG259_RS22115 (BG259_22190) - 1114245..1115231 (+) 987 WP_074051593.1 peptidoglycan DD-metalloendopeptidase family protein -
  BG259_RS22120 (BG259_22195) ylqF 1115548..1116492 (+) 945 WP_074051594.1 ribosome biogenesis GTPase YlqF -
  BG259_RS22125 (BG259_22200) cqsA 1117026..1118207 (+) 1182 WP_026000191.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BG259_RS22130 (BG259_22205) - 1118341..1120392 (-) 2052 WP_074051595.1 hybrid sensor histidine kinase/response regulator -
  BG259_RS22135 (BG259_22210) - 1120679..1121296 (+) 618 WP_050940222.1 HAD family hydrolase -
  BG259_RS22140 (BG259_22215) - 1121371..1121919 (-) 549 WP_005447141.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43694.80 Da        Isoelectric Point: 6.4464

>NTDB_id=209660 BG259_RS22125 WP_026000191.1 1117026..1118207(+) (cqsA) [Vibrio harveyi strain QT520]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=209660 BG259_RS22125 WP_026000191.1 1117026..1118207(+) (cqsA) [Vibrio harveyi strain QT520]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAACACTTGGTTTTGGGTAAGCGACCACAATCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGCATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCGGTCTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCTGGTCTTGTGAAAGCGTTAGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTGGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAGAAGCTGGCTAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGTTCGACGGTGTTGCCACAAGAAGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3E250

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment