Detailed information NTG0209637

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BG259_RS09830
• Genome accession: NZ_CP018680
• Coordinates: 2072535..2073518 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain QT520
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2067535..2078518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BG259_RS09815 (BG259_09815)	recA	2068067..2069110 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
BG259_RS09820 (BG259_09820)	pncC	2069312..2069794 (-)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
BG259_RS09825 (BG259_09825)	mutS	2069880..2072441 (+)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
BG259_RS09830 (BG259_09830)	rpoS	2072535..2073518 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
BG259_RS09835 (BG259_09835)	-	2073599..2074522 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
BG259_RS09840 (BG259_09840)	-	2074537..2075163 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BG259_RS09845 (BG259_09845)	surE	2075163..2075939 (-)	777	WP_081384165.1	5'/3'-nucleotidase SurE	-
BG259_RS09850 (BG259_09850)	truD	2075939..2076982 (-)	1044	WP_074050819.1	tRNA pseudouridine(13) synthase TruD	-
BG259_RS09855 (BG259_09855)	ispF	2077028..2077504 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BG259_RS09860 (BG259_09860)	ispD	2077519..2078229 (-)	711	WP_074050820.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BG259_RS09865 (BG259_09865)	ftsB	2078231..2078512 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=209637 BG259_RS09830 WP_005452115.1 2072535..2073518(-) (rpoS) [Vibrio harveyi strain QT520]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=209637 BG259_RS09830 WP_005452115.1 2072535..2073518(-) (rpoS) [Vibrio harveyi strain QT520]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856