Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | BG259_RS05100 | Genome accession | NZ_CP018680 |
| Coordinates | 1158793..1160214 (+) | Length | 473 a.a. |
| NCBI ID | WP_005445536.1 | Uniprot ID | A0A9X3ML51 |
| Organism | Vibrio harveyi strain QT520 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1140970..1170394 | 1158793..1160214 | within | 0 |
Gene organization within MGE regions
Location: 1140970..1170394
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG259_RS05005 (BG259_05005) | - | 1140970..1141743 (-) | 774 | WP_074050521.1 | nucleotidyltransferase domain-containing protein | - |
| BG259_RS05010 (BG259_05010) | - | 1142104..1142547 (-) | 444 | WP_017818016.1 | AAA family ATPase | - |
| BG259_RS05020 (BG259_05020) | - | 1143095..1143511 (-) | 417 | WP_009703679.1 | lysozyme inhibitor LprI family protein | - |
| BG259_RS05025 (BG259_05025) | - | 1143675..1144031 (-) | 357 | WP_017190311.1 | hypothetical protein | - |
| BG259_RS05030 (BG259_05030) | - | 1144085..1144606 (-) | 522 | WP_045452642.1 | hypothetical protein | - |
| BG259_RS05035 (BG259_05035) | - | 1144665..1145846 (-) | 1182 | WP_237357988.1 | hypothetical protein | - |
| BG259_RS05040 (BG259_05040) | btuD | 1146093..1146860 (-) | 768 | WP_081384154.1 | vitamin B12 ABC transporter ATP-binding protein BtuD | - |
| BG259_RS05045 (BG259_05045) | btuC | 1146847..1147842 (-) | 996 | WP_009697375.1 | vitamin B12 ABC transporter permease BtuC | - |
| BG259_RS05050 (BG259_05050) | - | 1147945..1148973 (-) | 1029 | WP_005439838.1 | succinylglutamate desuccinylase | - |
| BG259_RS05055 (BG259_05055) | - | 1149212..1151011 (-) | 1800 | WP_017190315.1 | M3 family oligoendopeptidase | - |
| BG259_RS05060 (BG259_05060) | cobC | 1151094..1151708 (-) | 615 | WP_074050522.1 | alpha-ribazole phosphatase family protein | - |
| BG259_RS05065 (BG259_05065) | cobU | 1151705..1152253 (-) | 549 | WP_074050523.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| BG259_RS05070 (BG259_05070) | - | 1152250..1153056 (-) | 807 | WP_074050524.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| BG259_RS05075 (BG259_05075) | cobT | 1153056..1154099 (-) | 1044 | WP_081384155.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| BG259_RS05080 (BG259_05080) | - | 1154119..1154730 (-) | 612 | WP_017190319.1 | flavin reductase family protein | - |
| BG259_RS05085 (BG259_05085) | - | 1155466..1156161 (+) | 696 | WP_017818004.1 | NAD(P)H-binding protein | - |
| BG259_RS05090 (BG259_05090) | - | 1156356..1157729 (+) | 1374 | WP_053050855.1 | L-cystine transporter | - |
| BG259_RS05095 (BG259_05095) | - | 1157951..1158631 (+) | 681 | WP_005445535.1 | DUF1826 domain-containing protein | - |
| BG259_RS05100 (BG259_05100) | sbcB | 1158793..1160214 (+) | 1422 | WP_005445536.1 | exodeoxyribonuclease I | Machinery gene |
| BG259_RS05105 (BG259_05105) | - | 1160273..1160647 (+) | 375 | WP_005445537.1 | CidA/LrgA family protein | - |
| BG259_RS05110 (BG259_05110) | - | 1160649..1161326 (+) | 678 | WP_074050526.1 | LrgB family protein | - |
| BG259_RS05115 (BG259_05115) | cdd | 1161582..1162469 (+) | 888 | WP_005445539.1 | cytidine deaminase | - |
| BG259_RS05120 (BG259_05120) | purT | 1162617..1163792 (+) | 1176 | WP_009697365.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| BG259_RS05125 (BG259_05125) | - | 1163869..1164519 (-) | 651 | WP_042606219.1 | thiopurine S-methyltransferase | - |
| BG259_RS05130 (BG259_05130) | - | 1164856..1165629 (+) | 774 | WP_005445543.1 | phosphoribosylglycinamide formyltransferase | - |
| BG259_RS05135 (BG259_05135) | ihfA | 1165773..1166069 (-) | 297 | WP_005445544.1 | integration host factor subunit alpha | - |
| BG259_RS05140 (BG259_05140) | - | 1166596..1167474 (+) | 879 | WP_074050527.1 | AEC family transporter | - |
| BG259_RS05145 (BG259_05145) | - | 1167657..1167896 (+) | 240 | WP_047517048.1 | hypothetical protein | - |
| BG259_RS05150 (BG259_05150) | - | 1167918..1168340 (+) | 423 | WP_017817999.1 | hypothetical protein | - |
| BG259_RS05155 (BG259_05155) | - | 1168493..1168753 (+) | 261 | WP_005445548.1 | hypothetical protein | - |
| BG259_RS05160 (BG259_05160) | - | 1168753..1169136 (+) | 384 | WP_017817997.1 | hypothetical protein | - |
| BG259_RS05165 (BG259_05165) | - | 1169127..1169465 (+) | 339 | WP_029791121.1 | hypothetical protein | - |
| BG259_RS05170 (BG259_05170) | - | 1169669..1170394 (+) | 726 | WP_045490251.1 | metallophosphoesterase family protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54569.91 Da Isoelectric Point: 4.9808
>NTDB_id=209625 BG259_RS05100 WP_005445536.1 1158793..1160214(+) (sbcB) [Vibrio harveyi strain QT520]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=209625 BG259_RS05100 WP_005445536.1 1158793..1160214(+) (sbcB) [Vibrio harveyi strain QT520]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATTGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATTGCCAAAATTCATGCCGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.281 |
100 |
0.793 |