Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSU_06830 Genome accession   NC_000964
Coordinates   750959..752089 (+) Length   376 a.a.
NCBI ID   NP_388565.2    Uniprot ID   Q59HN8
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 745959..757089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_06790 (BSU06790) yeeD 746261..746566 (-) 306 NP_388561.1 conserved hypothetical protein; HGT island -
  BSU_06800 (BSU06800) yezA 746633..746839 (-) 207 NP_388562.1 hypothetical protein; HGT island -
  BSU_06811 (BSU06811) yezG 747079..747534 (-) 456 YP_003097692.1 conserved hypothetical protein; HGT island -
  BSU_06812 (BSU06812) yeeF 747554..749563 (-) 2010 NP_388563.2 putative nucleic acid binding protein; HGT island -
  BSU_06820 (BSU06820) yeeG 749775..750797 (+) 1023 NP_388564.2 putative phage receptor protein -
  BSU_06830 (BSU06830) rapC 750959..752089 (+) 1131 NP_388565.2 response regulator aspartate phosphatase Regulator
  BSU_06839 (BSU06839) phrH 752079..752252 (+) 174 YP_003097693.1 hexapeptide (TDRNTT) inhibitor of regulatory cascade -
  BSU_06840 (BSU06840) yeeI 752412..753131 (+) 720 NP_388566.3 putative DNA integrase or transcriptional regulator -
  BSU_06850 (BSU06850) cotK 753265..753702 (+) 438 NP_388567.2 spore inner coat protein -
  BSU_06860 (BSU06860) yezE 753817..754401 (+) 585 YP_054572.1 putative transcriptional regulator (TetR family) -
  BSU_06870 (BSU06870) yesE 754480..754923 (+) 444 NP_388568.1 hypothetical protein -
  BSU_06880 (BSU06880) yesF 754920..755780 (+) 861 NP_388569.1 putative oxidoreductase -
  BSU_06890 (BSU06890) cotJA 755907..756155 (+) 249 NP_388570.1 component of the inner spore coat -
  BSU_06900 (BSU06900) cotJB 756139..756402 (+) 264 NP_388571.2 component of the inner spore coat -
  BSU_06910 (BSU06910) cotJC 756417..756986 (+) 570 NP_388572.1 enzyme component of the inner spore coat -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=20960 BSU_06830 NP_388565.2 750959..752089(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=20960 BSU_06830 NP_388565.2 750959..752089(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402