Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AGE78_RS27595 Genome accession   NZ_CP018671
Coordinates   4940861..4941457 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain CAV1042     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4935861..4946457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGE78_RS27570 (AGE78_27575) - 4936053..4937810 (-) 1758 WP_040150863.1 Lon protease family protein -
  AGE78_RS27575 (AGE78_27580) matP 4937996..4938448 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AGE78_RS27580 (AGE78_27585) ompA 4938580..4939650 (-) 1071 WP_002898408.1 porin OmpA -
  AGE78_RS27585 (AGE78_27590) sulA 4940003..4940512 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AGE78_RS27595 (AGE78_27600) sxy/tfoX 4940861..4941457 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AGE78_RS27600 (AGE78_27605) yccS 4941471..4943606 (-) 2136 WP_002898422.1 YccS family putative transporter -
  AGE78_RS27605 (AGE78_27610) - 4943624..4944070 (-) 447 WP_002898425.1 YccF domain-containing protein -
  AGE78_RS27610 (AGE78_27615) helD 4944195..4946249 (+) 2055 WP_071556652.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=209570 AGE78_RS27595 WP_004179217.1 4940861..4941457(+) (sxy/tfoX) [Klebsiella pneumoniae strain CAV1042]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=209570 AGE78_RS27595 WP_004179217.1 4940861..4941457(+) (sxy/tfoX) [Klebsiella pneumoniae strain CAV1042]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment