Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CRN68_RS25975 Genome accession   NZ_CP023960
Coordinates   4785317..4785832 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain FDAARGOS_448     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4780317..4790832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN68_RS25930 (CRN68_25925) csrA 4781070..4781255 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CRN68_RS25960 (CRN68_25955) yqaB 4782547..4783113 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CRN68_RS25965 (CRN68_25960) yqaA 4783110..4783538 (+) 429 WP_001287454.1 YqaA family protein -
  CRN68_RS25970 (CRN68_25965) gshA 4783611..4785167 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  CRN68_RS25975 (CRN68_25970) luxS 4785317..4785832 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CRN68_RS25980 (CRN68_25975) emrB 4785896..4787434 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CRN68_RS25985 (CRN68_25980) emrA 4787451..4788623 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CRN68_RS25990 (CRN68_25985) emrR 4788750..4789280 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CRN68_RS25995 (CRN68_25990) ygaH 4789371..4789706 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CRN68_RS26000 (CRN68_25995) ygaZ 4789696..4790433 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=209540 CRN68_RS25975 WP_001130211.1 4785317..4785832(+) (luxS) [Escherichia coli strain FDAARGOS_448]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=209540 CRN68_RS25975 WP_001130211.1 4785317..4785832(+) (luxS) [Escherichia coli strain FDAARGOS_448]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731