Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AUO97_RS04855 Genome accession   NZ_CP018664
Coordinates   1038886..1039359 (-) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii strain ATCC 17978-VU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1033886..1044359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUO97_RS04840 (AUO97_04840) pilX 1036515..1037333 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AUO97_RS04845 (AUO97_04845) pilW 1037330..1038331 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  AUO97_RS04850 (AUO97_04850) pilV 1038332..1038892 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AUO97_RS04855 (AUO97_04855) fimU 1038886..1039359 (-) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  AUO97_RS04860 (AUO97_04860) ispH 1039529..1040479 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AUO97_RS04865 (AUO97_04865) gmk 1040602..1041231 (+) 630 WP_000015937.1 guanylate kinase -
  AUO97_RS04870 (AUO97_04870) rpoZ 1041304..1041582 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AUO97_RS19375 - 1041621..1041751 (+) 131 Protein_940 hypothetical protein -
  AUO97_RS04875 (AUO97_04875) - 1041791..1043896 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=209513 AUO97_RS04855 WP_001214058.1 1038886..1039359(-) (fimU) [Acinetobacter baumannii strain ATCC 17978-VU]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=209513 AUO97_RS04855 WP_001214058.1 1038886..1039359(-) (fimU) [Acinetobacter baumannii strain ATCC 17978-VU]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment