Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRN68_RS15695 Genome accession   NZ_CP023960
Coordinates   2802319..2802795 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain FDAARGOS_448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2797319..2807795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN68_RS15665 (CRN68_15660) istA 2798538..2800079 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  CRN68_RS15670 (CRN68_15665) istB 2800094..2800840 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  CRN68_RS15680 (CRN68_15675) - 2801316..2801414 (-) 99 Protein_2660 TA system toxin CbtA family protein -
  CRN68_RS15685 (CRN68_15680) - 2801504..2801872 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRN68_RS15690 (CRN68_15685) - 2802035..2802256 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CRN68_RS15695 (CRN68_15690) radC 2802319..2802795 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  CRN68_RS15700 (CRN68_15695) - 2802811..2803282 (-) 472 Protein_2664 antirestriction protein -
  CRN68_RS15710 (CRN68_15705) - 2803624..2804442 (-) 819 WP_001234656.1 DUF932 domain-containing protein -
  CRN68_RS15720 (CRN68_15715) - 2804560..2804755 (-) 196 Protein_2666 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=209494 CRN68_RS15695 WP_001186775.1 2802319..2802795(-) (radC) [Escherichia coli strain FDAARGOS_448]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=209494 CRN68_RS15695 WP_001186775.1 2802319..2802795(-) (radC) [Escherichia coli strain FDAARGOS_448]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment