Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CRN68_RS09480 Genome accession   NZ_CP023960
Coordinates   1552722..1554149 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_448     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1547722..1559149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN68_RS09445 (CRN68_09445) yeeW 1547906..1548100 (+) 195 WP_000988600.1 DUF5983 family protein -
  CRN68_RS28710 - 1548146..1548226 (+) 81 Protein_1520 hypothetical protein -
  CRN68_RS09450 (CRN68_09450) - 1548515..1548661 (-) 147 Protein_1521 transposase domain-containing protein -
  CRN68_RS09455 (CRN68_09455) - 1548715..1548897 (+) 183 WP_099004463.1 EutP/PduV family microcompartment system protein -
  CRN68_RS09460 (CRN68_09460) tmaR 1548998..1549327 (-) 330 WP_000450409.1 DUF496 family protein -
  CRN68_RS09465 (CRN68_09465) yeeA 1549499..1550557 (-) 1059 WP_001200890.1 FUSC family protein -
  CRN68_RS09470 (CRN68_09470) sbmC 1550755..1551228 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  CRN68_RS09475 (CRN68_09475) dacD 1551347..1552513 (-) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CRN68_RS09480 (CRN68_09480) sbcB 1552722..1554149 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  CRN68_RS09485 (CRN68_09485) tsuB 1554192..1554419 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CRN68_RS09490 (CRN68_09490) tsuA 1554433..1555491 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  CRN68_RS09495 (CRN68_09495) plaP 1555670..1557028 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CRN68_RS09500 yoeI 1557018..1557080 (-) 63 WP_010723108.1 membrane protein YoeI -
  CRN68_RS09505 (CRN68_09500) yeeY 1557295..1558224 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  CRN68_RS09510 (CRN68_09505) yeeZ 1558270..1559094 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=209478 CRN68_RS09480 WP_021523141.1 1552722..1554149(+) (sbcB) [Escherichia coli strain FDAARGOS_448]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=209478 CRN68_RS09480 WP_021523141.1 1552722..1554149(+) (sbcB) [Escherichia coli strain FDAARGOS_448]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment