Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CRN16_RS14740 Genome accession   NZ_CP023899
Coordinates   2582752..2583267 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_433     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2577752..2588267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN16_RS14695 (CRN16_14695) csrA 2578339..2578524 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CRN16_RS14725 (CRN16_14725) yqaB 2579982..2580548 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CRN16_RS14730 (CRN16_14730) yqaA 2580545..2580973 (+) 429 WP_001287457.1 YqaA family protein -
  CRN16_RS14735 (CRN16_14735) gshA 2581046..2582602 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CRN16_RS14740 (CRN16_14740) luxS 2582752..2583267 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  CRN16_RS14745 (CRN16_14745) emrB 2583331..2584869 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CRN16_RS14750 (CRN16_14750) emrA 2584886..2586058 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CRN16_RS14755 (CRN16_14755) emrR 2586185..2586715 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CRN16_RS14760 (CRN16_14760) ygaH 2586806..2587141 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  CRN16_RS14765 (CRN16_14765) ygaZ 2587131..2587868 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=209433 CRN16_RS14740 WP_001130207.1 2582752..2583267(+) (luxS) [Escherichia coli strain FDAARGOS_433]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=209433 CRN16_RS14740 WP_001130207.1 2582752..2583267(+) (luxS) [Escherichia coli strain FDAARGOS_433]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment