Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   JHP_RS05820 Genome accession   NC_000921
Coordinates   1241718..1242767 (+) Length   349 a.a.
NCBI ID   WP_000115500.1    Uniprot ID   -
Organism   Helicobacter pylori J99     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236718..1247767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHP_RS05800 (jhp1112) - 1236741..1237484 (+) 744 WP_010882609.1 carbonic anhydrase -
  JHP_RS05805 (jhp1113) - 1237715..1238866 (-) 1152 WP_010882610.1 DUF874 family protein -
  JHP_RS05810 (jhp1114) asd 1239301..1240341 (-) 1041 WP_000860865.1 aspartate-semialdehyde dehydrogenase -
  JHP_RS05815 (jhp1115) hisS 1240328..1241656 (-) 1329 WP_000632487.1 histidine--tRNA ligase -
  JHP_RS05820 (jhp1116) waaF 1241718..1242767 (+) 1050 WP_000115500.1 lipopolysaccharide heptosyltransferase II Regulator
  JHP_RS08495 (jhp_1117) - 1242951..1243115 (-) 165 WP_000744175.1 hypothetical protein -
  JHP_RS08835 - 1243215..1243411 (+) 197 Protein_1136 hypothetical protein -
  JHP_RS05830 (jhp1118) fusA 1243658..1245736 (-) 2079 WP_000101866.1 elongation factor G -
  JHP_RS05835 (jhp1119) rpsG 1245748..1246215 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  JHP_RS05840 (jhp1120) rpsL 1246231..1246638 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39521.19 Da        Isoelectric Point: 9.5546

>NTDB_id=20942 JHP_RS05820 WP_000115500.1 1241718..1242767(+) (waaF) [Helicobacter pylori J99]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAVALLEKGHEIYFFGAKEDAIVSEEILKSVKNLLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=20942 JHP_RS05820 WP_000115500.1 1241718..1242767(+) (waaF) [Helicobacter pylori J99]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTAGGCCCAACCATTACGTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAATATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCGGTTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GAGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAACTTATTGAAAAACCCCTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.135

97.994

0.364

Multiple sequence alignment