Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JHP_RS03785 Genome accession   NC_000921
Coordinates   811436..812956 (-) Length   506 a.a.
NCBI ID   WP_000611047.1    Uniprot ID   -
Organism   Helicobacter pylori J99     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806436..817956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHP_RS03775 (jhp0726) - 807943..809307 (-) 1365 WP_001033117.1 restriction endonuclease subunit S -
  JHP_RS03780 (jhp0727) - 809351..811411 (-) 2061 WP_001158764.1 heavy metal translocating P-type ATPase -
  JHP_RS03785 (jhp0728) comM 811436..812956 (-) 1521 WP_000611047.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JHP_RS03790 (jhp0729) def 812962..813486 (-) 525 WP_001185863.1 peptide deformylase -
  JHP_RS03795 (jhp0730) clpP 813491..814078 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  JHP_RS03800 (jhp0731) tig 814099..815454 (-) 1356 WP_001047759.1 trigger factor -
  JHP_RS03805 (jhp0732) - 815567..816403 (-) 837 WP_001037714.1 outer membrane protein -
  JHP_RS03810 (jhp0733) hpaA 816425..817207 (-) 783 WP_000855917.1 flagellar sheath lipoprotein HpaA -
  JHP_RS03815 (jhp0734) moaC 817326..817802 (-) 477 WP_001131526.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57218.25 Da        Isoelectric Point: 8.6897

>NTDB_id=20935 JHP_RS03785 WP_000611047.1 811436..812956(-) (comM) [Helicobacter pylori J99]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQTPEIKADTHTKKLPFKTIELNDKEYYFSDTYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLKQAVERFNLSMRSVNKAKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=20935 JHP_RS03785 WP_000611047.1 811436..812956(-) (comM) [Helicobacter pylori J99]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCTGAAATCGTGGCTGTGGAGGCGACTTTCACAAGAGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCCAATAACTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAGA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGAAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTCTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGTTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAACTCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCTTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACACCTACGCCTTAGATTTTAAGGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCCTTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGAAGCTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTAGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCTACTAAAGCATGCCGTTGCCAAG
ACAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCATCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAAAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGCCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCACTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment