Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT29_RS25050 Genome accession   NZ_CP023853
Coordinates   5035637..5036113 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 2/0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5030637..5041113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT29_RS25020 (CRT29_26020) - 5030758..5033604 (+) 2847 WP_124811587.1 Ag43/Cah family autotransporter adhesin -
  CRT29_RS25025 (CRT29_26025) - 5033675..5033870 (+) 196 Protein_4823 DUF905 family protein -
  CRT29_RS25035 (CRT29_26035) - 5033988..5034806 (+) 819 WP_001234738.1 DUF932 domain-containing protein -
  CRT29_RS25045 (CRT29_26045) - 5035148..5035621 (+) 474 WP_001350782.1 antirestriction protein -
  CRT29_RS25050 (CRT29_26050) radC 5035637..5036113 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  CRT29_RS25055 (CRT29_26055) - 5036176..5036397 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  CRT29_RS25060 (CRT29_26060) - 5036560..5036928 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRT29_RS25065 (CRT29_26065) - 5037018..5037245 (+) 228 Protein_4829 TA system toxin CbtA family protein -
  CRT29_RS25070 (CRT29_26070) istA 5037446..5038987 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  CRT29_RS25075 (CRT29_26075) istB 5039002..5039748 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  CRT29_RS25080 (CRT29_26080) - 5039832..5039981 (+) 150 Protein_4832 TA system toxin CbtA family protein -
  CRT29_RS25085 (CRT29_26085) - 5039978..5040466 (+) 489 WP_000761690.1 DUF5983 family protein -
  CRT29_RS25090 (CRT29_26090) - 5040483..5040659 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  CRT29_RS26850 - 5040765..5040914 (+) 150 Protein_4835 hypothetical protein -
  CRT29_RS27645 (CRT29_26095) - 5040884..5041018 (+) 135 Protein_4836 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=209283 CRT29_RS25050 WP_001186775.1 5035637..5036113(+) (radC) [Escherichia coli strain 2/0]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=209283 CRT29_RS25050 WP_001186775.1 5035637..5036113(+) (radC) [Escherichia coli strain 2/0]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment