Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT29_RS21205 Genome accession   NZ_CP023853
Coordinates   4241778..4242254 (+) Length   158 a.a.
NCBI ID   WP_124811586.1    Uniprot ID   -
Organism   Escherichia coli strain 2/0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4236778..4247254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT29_RS21185 (CRT29_22025) - 4237130..4239976 (+) 2847 WP_032193765.1 Ag43/Cah family autotransporter adhesin -
  CRT29_RS21190 (CRT29_22030) - 4240047..4240280 (+) 234 WP_001117568.1 DUF905 family protein -
  CRT29_RS21195 (CRT29_22035) - 4240371..4241189 (+) 819 WP_001234753.1 DUF932 domain-containing protein -
  CRT29_RS21200 (CRT29_22040) - 4241281..4241766 (+) 486 WP_000214415.1 antirestriction protein -
  CRT29_RS21205 (CRT29_22045) radC 4241778..4242254 (+) 477 WP_124811586.1 RadC family protein Machinery gene
  CRT29_RS21210 (CRT29_22050) - 4242323..4242544 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  CRT29_RS21215 (CRT29_22055) - 4242618..4242986 (+) 369 WP_024175935.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRT29_RS21220 (CRT29_22060) - 4243076..4243453 (+) 378 WP_001094448.1 TA system toxin CbtA family protein -
  CRT29_RS21225 (CRT29_22065) - 4243450..4243938 (+) 489 WP_000761714.1 DUF5983 family protein -
  CRT29_RS21230 (CRT29_22070) - 4243950..4244142 (+) 193 Protein_4113 hypothetical protein -
  CRT29_RS21235 (CRT29_22075) - 4244227..4245072 (+) 846 WP_000065751.1 DUF4942 domain-containing protein -
  CRT29_RS21240 (CRT29_22085) - 4245665..4246162 (+) 498 WP_000509815.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17631.28 Da        Isoelectric Point: 7.6151

>NTDB_id=209260 CRT29_RS21205 WP_124811586.1 4241778..4242254(+) (radC) [Escherichia coli strain 2/0]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRIPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=209260 CRT29_RS21205 WP_124811586.1 4241778..4242254(+) (radC) [Escherichia coli strain 2/0]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGATACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment