Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CRT29_RS17235 Genome accession   NZ_CP023853
Coordinates   3427647..3428885 (+) Length   412 a.a.
NCBI ID   WP_032233684.1    Uniprot ID   -
Organism   Escherichia coli strain 2/0     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3422647..3433885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT29_RS17220 (CRT29_17850) - 3423162..3424838 (+) 1677 WP_001296395.1 polysaccharide biosynthesis/export family protein -
  CRT29_RS17225 (CRT29_17855) kdsB 3424848..3425588 (+) 741 WP_000030748.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CRT29_RS17230 (CRT29_17860) - 3425585..3427612 (+) 2028 WP_039052384.1 capsular polysaccharide biosynthesis protein -
  CRT29_RS17235 (CRT29_17865) kpsS 3427647..3428885 (+) 1239 WP_032233684.1 capsular biosynthesis protein Regulator
  CRT29_RS17240 (CRT29_17870) - 3429047..3430042 (-) 996 WP_061089240.1 hypothetical protein -
  CRT29_RS17245 (CRT29_17875) - 3430048..3431076 (-) 1029 WP_001044673.1 XcbB/CpsF family capsular polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 48838.40 Da        Isoelectric Point: 10.1113

>NTDB_id=209244 CRT29_RS17235 WP_032233684.1 3427647..3428885(+) (kpsS) [Escherichia coli strain 2/0]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLTYYQTPKEFPGWLRALHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGGYYGGVKFENALGM
NKDFLFGSKSIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=209244 CRT29_RS17235 WP_032233684.1 3427647..3428885(+) (kpsS) [Escherichia coli strain 2/0]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGACTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGCTCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCCTCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGACATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGGTTATTATGGAGGAGTAAAATTTGAGAATGCATTGGGTATG
AATAAAGATTTTTTGTTTGGATCAAAGTCAATATCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

94.417

0.376