Detailed information NTG0209239

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRT29_RS15475
• Genome accession: NZ_CP023853
• Coordinates: 3066226..3067218 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2/0
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3061226..3072218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRT29_RS15455 (CRT29_16065)	ygbM	3061864..3062640 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
CRT29_RS15460 (CRT29_16070)	ygbN	3062729..3064093 (+)	1365	WP_000104433.1	GntP family transporter	-
CRT29_RS15465 (CRT29_16075)	-	3064236..3065279 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
CRT29_RS15470 (CRT29_16080)	-	3065504..3066055 (+)	552	WP_001179444.1	flavodoxin family protein	-
CRT29_RS15475 (CRT29_16085)	rpoS	3066226..3067218 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRT29_RS15480 (CRT29_16090)	nlpD	3067281..3068375 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
CRT29_RS15485 (CRT29_16095)	pcm	3068560..3069186 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRT29_RS15490 (CRT29_16100)	surE	3069180..3069941 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRT29_RS15495 (CRT29_16105)	truD	3069922..3070971 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
CRT29_RS15500 (CRT29_16110)	ispF	3070968..3071447 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRT29_RS15505 (CRT29_16115)	ispD	3071447..3072157 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=209239 CRT29_RS15475 WP_000081550.1 3066226..3067218(-) (rpoS) [Escherichia coli strain 2/0]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=209239 CRT29_RS15475 WP_000081550.1 3066226..3067218(-) (rpoS) [Escherichia coli strain 2/0]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715