Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BTN64_RS13025 Genome accession   NZ_CP018635
Coordinates   2625487..2626092 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Enteritidis strain 56-3991     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620487..2631092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTN64_RS13005 (BTN64_12915) - 2620882..2622642 (-) 1761 WP_000156448.1 AAA family ATPase -
  BTN64_RS13010 (BTN64_12920) matP 2622828..2623280 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  BTN64_RS13015 (BTN64_12925) ompA 2623352..2624404 (-) 1053 WP_001674965.1 porin OmpA -
  BTN64_RS13020 (BTN64_12930) sulA 2624761..2625270 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  BTN64_RS13025 (BTN64_12935) sxy/tfoX 2625487..2626092 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  BTN64_RS13030 (BTN64_12940) yccS 2626079..2628232 (-) 2154 WP_000950876.1 YccS family putative transporter -
  BTN64_RS13035 (BTN64_12945) - 2628251..2628697 (-) 447 WP_001261222.1 YccF domain-containing protein -
  BTN64_RS13040 (BTN64_12950) helD 2628821..2630875 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=209230 BTN64_RS13025 WP_001202375.1 2625487..2626092(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain 56-3991]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=209230 BTN64_RS13025 WP_001202375.1 2625487..2626092(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain 56-3991]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment