Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   JHP_RS01110 Genome accession   NC_000921
Coordinates   227794..229140 (+) Length   448 a.a.
NCBI ID   WP_010882501.1    Uniprot ID   Q9ZMK9
Organism   Helicobacter pylori J99     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 222794..234140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHP_RS07940 (jhp_0203) - 222822..223733 (+) 912 Protein_208 beta-1,4-N-acetylgalactosamyltransferase -
  JHP_RS01085 (jhp0204) - 223802..224428 (-) 627 WP_001933236.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  JHP_RS01090 (jhp0205) - 224494..224958 (+) 465 WP_000445833.1 helix-turn-helix domain-containing protein -
  JHP_RS08770 - 224970..225104 (+) 135 WP_001251174.1 hypothetical protein -
  JHP_RS01095 (jhp0206) - 225126..226289 (+) 1164 WP_000941654.1 NifS family cysteine desulfurase -
  JHP_RS01100 (jhp0207) - 226311..227291 (+) 981 WP_001051933.1 iron-sulfur cluster assembly scaffold protein NifU -
  JHP_RS01105 (jhp0208) - 227455..227715 (+) 261 WP_000858670.1 ribbon-helix-helix domain-containing protein -
  JHP_RS01110 (jhp0209) radA/sms 227794..229140 (+) 1347 WP_010882501.1 DNA repair protein RadA Machinery gene
  JHP_RS01115 (jhp0210) msrB 229264..230343 (+) 1080 WP_000699028.1 peptide-methionine (R)-S-oxide reductase MsrB -
  JHP_RS01120 (jhp0211) - 230748..231581 (-) 834 WP_000392992.1 sulfite exporter TauE/SafE family protein -
  JHP_RS01125 (jhp0212) - 231799..233889 (-) 2091 WP_000694329.1 outer membrane protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49556.52 Da        Isoelectric Point: 7.2277

>NTDB_id=20922 JHP_RS01110 WP_010882501.1 227794..229140(+) (radA/sms) [Helicobacter pylori J99]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLNALKKPLPQVQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEEELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=20922 JHP_RS01110 WP_010882501.1 227794..229140(+) (radA/sms) [Helicobacter pylori J99]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGCTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACGCACTTAAAAAACCGCTCCCACAAG
TGCAAAAAAGCGTTTCTATCGCTGAAATTGAACATGAAGAAGTCATTAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTACGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGATTGCATAGAAGAAGAATTGTATTTGCTCAATGAAATCAATTGGCCTGTGATTAAAGCTAAT
ATGGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATCCAAACGCTTTATTCGCCAGAGATTTCTTCAGCCCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GCCATATCACTAAAGAAGGGAGCATCGCAGGCCCTAGAGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAACTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAAGGTTTGGTAAGCGCCAAAGAAGCTTCAAGCTTGTTTTTTTCTAAAGAAGAGCCTATGGAAGGGAGCGCCA
TTACCATCACTTTAGAAGGATCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGGGCGCCC
AAACGATTAGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAAATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACTTCTATCAAATGCTATGAAGCTAATGTGGTGGGTAAGATTGTTGAGTGGATGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(62-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZMK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.073

95.313

0.449
  radA Streptococcus pneumoniae Rx1

46.948

95.089

0.446
  radA Streptococcus pneumoniae D39

46.948

95.089

0.446
  radA Streptococcus pneumoniae R6

46.948

95.089

0.446
  radA Streptococcus pneumoniae TIGR4

46.948

95.089

0.446
  radA Streptococcus mitis SK321

46.948

95.089

0.446
  radA Streptococcus mitis NCTC 12261

46.714

95.089

0.444

Multiple sequence alignment