Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT29_RS04145 Genome accession   NZ_CP023853
Coordinates   860937..861413 (-) Length   158 a.a.
NCBI ID   WP_061089228.1    Uniprot ID   -
Organism   Escherichia coli strain 2/0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 855937..866413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT29_RS04110 (CRT29_04295) istA 856447..857946 (-) 1500 WP_000174399.1 IS21-like element ISEc10 family transposase -
  CRT29_RS04115 (CRT29_04300) - 858102..858950 (-) 849 WP_001280489.1 DUF4942 domain-containing protein -
  CRT29_RS04120 (CRT29_04305) - 859035..859232 (-) 198 WP_000839256.1 DUF957 domain-containing protein -
  CRT29_RS04125 (CRT29_04310) - 859250..859738 (-) 489 WP_000761686.1 DUF5983 family protein -
  CRT29_RS04130 (CRT29_04315) cbtA 859735..860112 (-) 378 WP_000854824.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CRT29_RS04135 (CRT29_04320) - 860202..860585 (-) 384 Protein_802 type IV toxin-antitoxin system YeeU family antitoxin -
  CRT29_RS04140 (CRT29_04325) - 860647..860868 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  CRT29_RS04145 (CRT29_04330) radC 860937..861413 (-) 477 WP_061089228.1 RadC family protein Machinery gene
  CRT29_RS04150 (CRT29_04340) - 861428..861913 (-) 486 WP_021522473.1 antirestriction protein -
  CRT29_RS04155 (CRT29_04345) - 862004..862822 (-) 819 WP_021522474.1 DUF932 domain-containing protein -
  CRT29_RS04160 (CRT29_04350) - 862912..863145 (-) 234 WP_001278280.1 DUF905 family protein -
  CRT29_RS04165 (CRT29_04355) - 863151..863828 (-) 678 WP_001097307.1 hypothetical protein -
  CRT29_RS04170 (CRT29_04360) - 863976..864656 (-) 681 WP_001282919.1 WYL domain-containing protein -
  CRT29_RS04175 (CRT29_04365) - 864859..865743 (-) 885 WP_000010384.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17675.34 Da        Isoelectric Point: 7.6149

>NTDB_id=209211 CRT29_RS04145 WP_061089228.1 860937..861413(-) (radC) [Escherichia coli strain 2/0]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQIFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=209211 CRT29_RS04145 WP_061089228.1 860937..861413(-) (radC) [Escherichia coli strain 2/0]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGATTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399