Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BTN65_RS12910 Genome accession   NZ_CP018633
Coordinates   2609410..2610015 (+) Length   201 a.a.
NCBI ID   WP_001202372.1    Uniprot ID   A0A5Y3LDE2
Organism   Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2604410..2615015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTN65_RS12890 (BTN65_12840) - 2604805..2606565 (-) 1761 WP_080177874.1 AAA family ATPase -
  BTN65_RS12895 (BTN65_12845) matP 2606751..2607203 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  BTN65_RS12900 (BTN65_12850) ompA 2607275..2608327 (-) 1053 WP_001674965.1 porin OmpA -
  BTN65_RS12905 (BTN65_12855) sulA 2608684..2609193 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  BTN65_RS12910 (BTN65_12860) sxy/tfoX 2609410..2610015 (+) 606 WP_001202372.1 TfoX/Sxy family DNA transformation protein Regulator
  BTN65_RS12915 (BTN65_12865) yccS 2610002..2612155 (-) 2154 WP_000950873.1 YccS family putative transporter -
  BTN65_RS12920 (BTN65_12870) - 2612174..2612620 (-) 447 WP_001261222.1 YccF domain-containing protein -
  BTN65_RS12925 (BTN65_12875) helD 2612744..2614798 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23190.98 Da        Isoelectric Point: 8.7403

>NTDB_id=209208 BTN65_RS12910 WP_001202372.1 2609410..2610015(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPLAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=209208 BTN65_RS12910 WP_001202372.1 2609410..2610015(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCTCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y3LDE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment