Detailed information NTG0209177

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: IMCC3135_RS05205
• Genome accession: NZ_CP018632
• Coordinates: 1226580..1227551 (-)
• Length: 323 a.a.
• NCBI ID: WP_088916637.1
• Uniprot ID: A0A2Z2NKW8
• Organism: Granulosicoccus antarcticus IMCC3135
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1221580..1232551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMCC3135_RS05180 (IMCC3135_05235)	-	1221587..1223125 (+)	1539	WP_088916632.1	sensor histidine kinase	-
IMCC3135_RS05185 (IMCC3135_05240)	-	1223154..1223654 (-)	501	WP_205737915.1	OsmC family protein	-
IMCC3135_RS05190 (IMCC3135_05245)	rpoH	1223837..1224706 (-)	870	WP_088916634.1	RNA polymerase sigma factor RpoH	-
IMCC3135_RS05195 (IMCC3135_05250)	ftsX	1224868..1225830 (-)	963	WP_088916635.1	permease-like cell division protein FtsX	-
IMCC3135_RS05200 (IMCC3135_05255)	ftsE	1225873..1226583 (-)	711	WP_088916636.1	cell division ATP-binding protein FtsE	-
IMCC3135_RS05205 (IMCC3135_05260)	pilA	1226580..1227551 (-)	972	WP_088916637.1	signal recognition particle-docking protein FtsY	Machinery gene
IMCC3135_RS05210 (IMCC3135_05265)	rsmD	1227665..1228303 (+)	639	WP_205737916.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
IMCC3135_RS05215 (IMCC3135_05270)	coaD	1228384..1228887 (+)	504	WP_088916639.1	pantetheine-phosphate adenylyltransferase	-
IMCC3135_RS05220 (IMCC3135_05275)	-	1228887..1229150 (+)	264	WP_088916640.1	YfhL family 4Fe-4S dicluster ferredoxin	-
IMCC3135_RS05225 (IMCC3135_05280)	mutM	1229293..1230105 (-)	813	WP_088916641.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
IMCC3135_RS05230 (IMCC3135_05285)	-	1230105..1230911 (-)	807	WP_157735775.1	hypothetical protein	-
IMCC3135_RS05235 (IMCC3135_05290)	-	1230926..1232263 (-)	1338	WP_088916643.1	GldG family protein	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 34853.87 Da
• Isoelectric Point: 5.1090

>NTDB_id=209177 IMCC3135_RS05205 WP_088916637.1 1226580..1227551(-) (pilA) [Granulosicoccus antarcticus IMCC3135]
MGIFSFLKRQKTQREQEPEVSAPLEAKLSRTRSKFRDNLLDFMLGNKPINADLLEELESQLIMADVGIEATARVMSVLNR
QVSRSEVGDSTALRQALQLELVKLLTAVEQPLEIPDSDSPFVILVVGVNGSGKTTTIGKLAKQLQDGGKSVMLAAGDTFR
AAAVEQLQTWGERNNVPVISQGSGADSASVIFDAVQSAKARGIDVLIADTAGRLHTQNNLMEELQKVKRVIGKLDPTAPH
ETLIVLDGGTGQNALNQARQFHETMQLTGMVVTKLDGTAKGGVIFAIAEHLGLPIRFIGVGEKVEDLEVFEAERYVNALV
SGS

Nucleotide

• Length: 972 bp

>NTDB_id=209177 IMCC3135_RS05205 WP_088916637.1 1226580..1227551(-) (pilA) [Granulosicoccus antarcticus IMCC3135]
ATGGGCATATTCAGCTTTCTTAAACGGCAAAAAACGCAGCGTGAGCAGGAACCAGAAGTCAGCGCACCTCTGGAAGCCAA
GCTTTCACGTACTCGTTCTAAATTTCGTGACAATCTACTGGACTTCATGCTCGGCAACAAGCCGATCAATGCGGACCTGC
TGGAGGAGCTGGAAAGCCAGCTGATCATGGCGGACGTGGGCATTGAGGCCACCGCCAGGGTCATGTCAGTGCTCAACCGG
CAAGTCAGCCGCTCGGAGGTCGGCGATTCGACCGCGTTGCGCCAGGCGCTGCAACTGGAACTGGTCAAATTGCTCACAGC
GGTTGAGCAGCCACTGGAAATCCCGGACAGCGATAGCCCGTTCGTGATTCTGGTGGTTGGCGTCAACGGCTCGGGCAAGA
CAACCACTATCGGCAAACTGGCCAAGCAGCTGCAGGATGGCGGTAAAAGCGTCATGCTGGCAGCCGGGGATACATTTCGC
GCCGCCGCGGTGGAACAGTTGCAGACTTGGGGCGAACGCAACAATGTACCGGTGATCTCCCAGGGATCAGGTGCCGACTC
GGCCTCCGTCATCTTCGATGCGGTGCAATCGGCCAAGGCACGCGGCATCGATGTACTGATTGCTGACACGGCTGGCCGCT
TGCACACTCAGAATAACCTTATGGAGGAGCTGCAGAAGGTCAAGCGCGTTATTGGCAAGCTTGACCCGACAGCGCCTCAT
GAGACCCTGATTGTGCTGGATGGAGGCACGGGGCAGAACGCCTTGAATCAGGCCCGACAATTTCACGAGACCATGCAGCT
GACCGGCATGGTGGTGACCAAACTGGATGGAACTGCCAAGGGTGGGGTTATTTTTGCCATTGCAGAACATCTGGGATTGC
CAATCCGCTTCATCGGCGTGGGCGAGAAAGTTGAGGACCTGGAAGTCTTCGAAGCCGAGCGCTATGTCAACGCATTGGTC
AGTGGCTCGTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (120-320)

• SRP54-type protein, helical bundle domain (SRP54_N) (38-101)

3D structure

• AlphaFold DB: A0A2Z2NKW8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.398	95.666	0.511