Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BTM20_RS09945 Genome accession   NZ_CP018630
Coordinates   2144179..2146038 (-) Length   619 a.a.
NCBI ID   WP_079481505.1    Uniprot ID   A0A1U6JJ90
Organism   Clostridium chauvoei strain 12S0467     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139179..2151038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTM20_RS09920 (BTM20_09930) - 2139879..2140871 (-) 993 WP_079481504.1 LacI family DNA-binding transcriptional regulator -
  BTM20_RS09925 (BTM20_09935) thiE 2140995..2141606 (-) 612 WP_021876184.1 thiamine phosphate synthase -
  BTM20_RS09930 (BTM20_09940) tenA 2141633..2142292 (-) 660 WP_021876185.1 thiaminase II -
  BTM20_RS09935 (BTM20_09945) thiM 2142294..2143073 (-) 780 WP_021876186.1 hydroxyethylthiazole kinase -
  BTM20_RS09940 (BTM20_09950) thiD 2143097..2143897 (-) 801 WP_021876187.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BTM20_RS09945 (BTM20_09955) rcrQ 2144179..2146038 (-) 1860 WP_079481505.1 ABC transporter ATP-binding protein Regulator
  BTM20_RS09950 (BTM20_09960) - 2146031..2148286 (-) 2256 WP_021876189.1 ABC transporter ATP-binding protein -
  BTM20_RS09955 (BTM20_09965) - 2148505..2148948 (+) 444 WP_021876190.1 MarR family winged helix-turn-helix transcriptional regulator -
  BTM20_RS09960 (BTM20_09970) - 2149037..2149822 (-) 786 WP_021876191.1 HAD family hydrolase -
  BTM20_RS09965 (BTM20_09975) - 2149927..2150595 (-) 669 WP_079481506.1 transaldolase family protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68746.52 Da        Isoelectric Point: 6.8479

>NTDB_id=209172 BTM20_RS09945 WP_079481505.1 2144179..2146038(-) (rcrQ) [Clostridium chauvoei strain 12S0467]
MSKKEVSIKKGFGGGHMGGAMRGGEKAKDFKGTMKNLMKYLNPFKWGMLLVIIFAIGSAAFSIVGPKILGKATNKIFDGL
MAKLTGATGAGIDFTYIGRVLLFLLGLYLLSALFSFIQGFVMSGISQKVSYNLRKEISEKINRMPLKYFDSKTHGEVLSR
VTNDVDSVSQNLNQSMTQVITSITTLIGVLIMMFSISWIMTLAALLILPISMIFISLVVKKSQKYFKSQQEYLGHVNGQV
EEVYGGHNIVKAFNGEEDAIEEFDRINNTLYGSAWKSQFLSGMMMPIMTFIGNLGYVMVSILGGWLAIKKTIGVGDILSF
IQYIRSFTQPIAQTAQVANLLQSTAAAAERVFEFLHEEEEEQFAENPASIENIKGQVTFENVSFGYNKDKTIINNFNANI
KQGQKVAIVGPTGAGKTTMVKLLMRFYDVNSGEILIDGHNIKDFNRDELRNLFGMVLQETWLFNGSIMENIRYGKLESTD
EEVIKAAKAAHVDHFVKTLPDGYNMELNEEASNVSQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENLM
EGRTSFIIAHRLSTIRDADLILVMKDGDIIEQGNHEELLKANGFYATLYNSQFENSQAS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=209172 BTM20_RS09945 WP_079481505.1 2144179..2146038(-) (rcrQ) [Clostridium chauvoei strain 12S0467]
ATGAGTAAAAAAGAAGTTAGTATAAAAAAGGGCTTTGGTGGTGGCCATATGGGTGGTGCTATGAGAGGTGGAGAAAAAGC
TAAAGATTTTAAAGGGACTATGAAAAATCTTATGAAATATTTAAATCCCTTTAAGTGGGGAATGCTTTTAGTTATTATAT
TTGCAATAGGTAGTGCAGCTTTTTCAATTGTTGGTCCTAAAATTTTAGGTAAAGCAACTAATAAGATTTTCGATGGTCTT
ATGGCAAAACTTACAGGAGCCACTGGAGCAGGAATAGATTTTACTTATATAGGTAGAGTGTTATTATTCTTACTTGGATT
ATATTTATTAAGTGCTTTATTCTCATTTATACAAGGATTTGTAATGTCAGGAATTTCTCAAAAGGTATCATATAACTTAA
GAAAAGAAATTTCAGAGAAAATAAATCGTATGCCACTTAAATATTTTGATTCTAAAACTCATGGCGAAGTATTATCTAGG
GTAACAAATGATGTAGATAGCGTAAGTCAAAATTTAAATCAAAGTATGACACAAGTTATTACATCAATAACAACTTTAAT
TGGTGTACTTATAATGATGTTCTCCATTAGTTGGATAATGACATTAGCAGCACTTTTAATACTACCAATATCAATGATTT
TTATATCACTAGTAGTAAAAAAATCACAAAAGTATTTTAAATCACAACAAGAATATCTAGGTCATGTAAATGGTCAAGTA
GAAGAAGTTTATGGTGGTCATAATATAGTAAAAGCATTTAATGGTGAAGAGGATGCAATAGAAGAATTTGATAGAATAAA
TAATACTTTATATGGTTCAGCTTGGAAGTCACAGTTTTTATCAGGTATGATGATGCCTATAATGACATTCATAGGAAACT
TAGGATATGTAATGGTATCTATTCTTGGTGGGTGGCTTGCAATTAAGAAGACAATAGGAGTTGGAGATATTCTTTCATTT
ATTCAATATATAAGAAGCTTTACGCAACCAATAGCTCAAACTGCTCAAGTAGCCAACTTATTACAATCAACAGCAGCAGC
TGCTGAAAGAGTATTTGAATTTTTACACGAAGAGGAAGAAGAACAATTTGCTGAAAATCCAGCAAGTATAGAAAATATTA
AAGGTCAAGTTACCTTTGAAAATGTTAGCTTTGGATATAATAAAGACAAGACAATAATAAATAATTTTAATGCAAATATA
AAACAAGGACAAAAAGTAGCTATAGTAGGTCCAACAGGAGCAGGAAAAACTACAATGGTAAAACTTTTAATGCGTTTTTA
TGATGTAAATAGTGGAGAGATTCTTATAGATGGCCATAATATAAAAGATTTTAATCGTGATGAGTTAAGAAATTTATTTG
GTATGGTTCTTCAAGAAACTTGGTTATTTAATGGTTCAATTATGGAAAATATAAGATATGGAAAATTAGAATCAACAGAT
GAAGAGGTTATAAAAGCTGCAAAGGCTGCTCATGTAGATCATTTTGTAAAAACTCTTCCAGATGGATATAATATGGAATT
AAATGAAGAAGCAAGTAATGTATCACAAGGACAAAAACAATTATTGACAATAGCTCGGGCTATTTTATCAGATCCAAAGA
TATTAATACTTGATGAAGCAACAAGTTCAGTTGATACTCGTACAGAAGTTTTAATTCAAAAGGCAATGGAAAACCTTATG
GAAGGAAGAACAAGTTTTATAATAGCACACAGATTATCAACTATTAGAGATGCAGATTTAATTCTAGTAATGAAAGATGG
AGATATTATAGAGCAAGGAAATCATGAAGAGTTATTAAAAGCAAATGGATTCTATGCAACTCTTTATAATAGTCAATTTG
AAAATTCACAAGCATCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U6JJ90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.316

94.184

0.493

Multiple sequence alignment