Detailed information NTG0209151

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRT34_RS15615
• Genome accession: NZ_CP023849
• Coordinates: 3074763..3075755 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 4/0
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3069763..3080755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRT34_RS15595 (CRT34_16215)	ygbM	3070401..3071177 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
CRT34_RS15600 (CRT34_16220)	ygbN	3071266..3072630 (+)	1365	WP_000104433.1	GntP family transporter	-
CRT34_RS15605 (CRT34_16225)	-	3072773..3073816 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
CRT34_RS15610 (CRT34_16230)	-	3074041..3074592 (+)	552	WP_001179444.1	flavodoxin family protein	-
CRT34_RS15615 (CRT34_16235)	rpoS	3074763..3075755 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRT34_RS15620 (CRT34_16240)	nlpD	3075818..3076912 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
CRT34_RS15625 (CRT34_16245)	pcm	3077097..3077723 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRT34_RS15630 (CRT34_16250)	surE	3077717..3078478 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRT34_RS15635 (CRT34_16255)	truD	3078459..3079508 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
CRT34_RS15640 (CRT34_16260)	ispF	3079505..3079984 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRT34_RS15645 (CRT34_16265)	ispD	3079984..3080694 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=209151 CRT34_RS15615 WP_000081550.1 3074763..3075755(-) (rpoS) [Escherichia coli strain 4/0]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=209151 CRT34_RS15615 WP_000081550.1 3074763..3075755(-) (rpoS) [Escherichia coli strain 4/0]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715