Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A21D_RS16145 Genome accession   NZ_CP018622
Coordinates   3532146..3533867 (+) Length   573 a.a.
NCBI ID   WP_077703588.1    Uniprot ID   A0A2K9J3R9
Organism   Virgibacillus dokdonensis strain 21D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3527146..3538867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A21D_RS16120 (A21D_03276) - 3528331..3528561 (+) 231 WP_073004335.1 exodeoxyribonuclease VII small subunit -
  A21D_RS16125 (A21D_03277) - 3528564..3529448 (+) 885 WP_414930306.1 polyprenyl synthetase family protein -
  A21D_RS16130 (A21D_03278) - 3530146..3530721 (+) 576 WP_101933878.1 hypothetical protein -
  A21D_RS16135 (A21D_03279) - 3530741..3531577 (+) 837 WP_101933879.1 TlyA family RNA methyltransferase -
  A21D_RS16140 (A21D_03280) ahrC 3531674..3532123 (+) 450 WP_073004330.1 transcriptional regulator AhrC/ArgR -
  A21D_RS16145 (A21D_03281) recN 3532146..3533867 (+) 1722 WP_077703588.1 DNA repair protein RecN Machinery gene
  A21D_RS16150 (A21D_03282) spoIVB 3534147..3535343 (+) 1197 WP_101933880.1 SpoIVB peptidase -
  A21D_RS16155 (A21D_03283) spo0A 3535737..3536513 (+) 777 WP_101933881.1 sporulation transcription factor Spo0A -
  A21D_RS16160 (A21D_03284) - 3536585..3537934 (-) 1350 WP_101933882.1 aspartate kinase -
  A21D_RS16165 (A21D_03285) - 3538089..3538340 (-) 252 WP_101933883.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65343.19 Da        Isoelectric Point: 5.2791

>NTDB_id=209092 A21D_RS16145 WP_077703588.1 3532146..3533867(+) (recN) [Virgibacillus dokdonensis strain 21D]
MLTELSIQDFAIINKLSVTFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGAKKADIEGLFIIDHDSHPVYTI
CEQYGIESEDQQLVLRRTITANGKSICRVNSKLVTLAVLREFGRTLIDIHSQHETQSLMNPEHHLDLLDLYQPELINKAK
KEYLKLYDQLSKLKNRYRKLSENEQETAQRLDLLQFQLRELEEAQLQPNEDKQLEEERNTLANFERIYSSLQLAYNSLYG
EQKGLDWVNQAQIALQDNSNYDASLAQKAEDIANYYYGLEELTYDLGNQIETLQFDPERLNEIEARLNEINRLKRKYGPT
VSDMLTYMAKIEEEVEEISNKDSHISKLEQQIKEKAKDAFLEAQELRDIRIKAAEALTKEIHEELKDLYLGKTEFKVDFA
KNIEPQKELDKHLHKNGMDDVTFLISTNPGEPPKPLNKVASGGELSRIMLSLKKIFARHQGVTSVIFDEVDTGVSGRVAQ
AIAEKIYHISQKSQVLCITHLPQVAAMADTHKLIEKEVMNQRTSTTVHELSQKLQINELARMITGTKLTDTAVDHAREML
EMAIQFKGKEHNL

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=209092 A21D_RS16145 WP_077703588.1 3532146..3533867(+) (recN) [Virgibacillus dokdonensis strain 21D]
GTGCTTACGGAATTGTCCATTCAGGATTTTGCGATAATCAACAAGCTTTCCGTTACTTTTAATGAAGGATTAACCGTTTT
AACAGGTGAAACGGGAGCTGGTAAATCAATTATTATTGATGCGGTTCAATTGCTCGCTGGAGGTAGAGGTTCTGTTGAAT
TTGTCCGTCATGGTGCTAAAAAGGCAGATATTGAAGGTTTATTTATTATTGATCATGATTCACATCCTGTGTATACTATT
TGCGAGCAGTATGGCATTGAAAGTGAAGACCAGCAACTTGTACTTAGACGTACCATAACAGCAAATGGGAAAAGTATTTG
TCGTGTTAATAGCAAATTAGTAACTTTAGCTGTCCTACGCGAATTTGGAAGGACATTAATTGATATTCATAGTCAGCACG
AAACACAGTCCCTTATGAATCCTGAGCATCATTTAGATTTGTTGGATTTATACCAGCCTGAATTAATTAATAAGGCGAAA
AAAGAATACTTGAAATTATATGACCAATTATCTAAATTAAAAAATCGTTATCGTAAATTGAGTGAAAATGAACAAGAAAC
AGCTCAACGATTAGATTTGTTGCAATTCCAGTTGCGGGAATTAGAAGAAGCCCAATTACAACCTAATGAAGACAAGCAAT
TGGAAGAAGAAAGGAATACTTTAGCTAATTTTGAGCGTATTTATTCATCCTTACAACTTGCTTACAATTCTCTTTATGGC
GAACAGAAAGGGCTTGATTGGGTCAATCAGGCGCAAATAGCGTTGCAAGATAATAGTAACTATGACGCTTCCCTAGCACA
AAAAGCAGAAGATATTGCAAATTATTACTATGGGTTAGAAGAATTGACCTATGACTTAGGAAATCAAATTGAAACGTTGC
AATTTGACCCAGAACGCCTAAATGAAATTGAAGCTCGTTTAAACGAAATTAATCGGTTAAAAAGAAAATATGGTCCTACT
GTTTCGGATATGTTAACTTATATGGCAAAGATAGAAGAAGAAGTAGAAGAAATAAGCAATAAAGATTCTCATATATCCAA
ACTCGAACAACAAATAAAAGAAAAAGCCAAGGATGCTTTTTTGGAAGCTCAAGAATTGCGTGATATCCGAATAAAAGCTG
CAGAGGCTTTGACAAAGGAAATTCATGAAGAATTAAAAGACCTTTATTTAGGAAAGACGGAATTTAAGGTCGATTTTGCT
AAGAATATCGAACCACAAAAAGAACTAGATAAGCATTTGCATAAAAATGGAATGGATGATGTGACATTTTTGATCTCCAC
AAATCCAGGTGAACCTCCTAAACCCTTAAATAAAGTAGCTTCTGGAGGAGAGCTATCTAGGATTATGTTAAGTTTGAAGA
AAATATTTGCAAGACATCAAGGTGTTACAAGTGTCATTTTTGATGAAGTAGATACTGGAGTAAGTGGTAGAGTGGCGCAA
GCGATTGCTGAAAAGATATATCACATCTCACAGAAGTCACAAGTTTTATGCATTACACATCTTCCGCAAGTGGCGGCTAT
GGCTGATACACATAAATTAATTGAAAAAGAAGTAATGAATCAACGGACATCTACAACTGTCCATGAATTAAGCCAAAAAT
TGCAAATCAATGAACTTGCTCGAATGATTACAGGAACAAAGCTTACAGATACAGCGGTGGATCATGCTAGAGAAATGTTA
GAAATGGCGATCCAATTTAAAGGAAAAGAGCATAATTTATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9J3R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.226

100

0.553

Multiple sequence alignment