Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A21D_RS13485 Genome accession   NZ_CP018622
Coordinates   2983445..2985253 (+) Length   602 a.a.
NCBI ID   WP_077703103.1    Uniprot ID   A0A2K9J1H2
Organism   Virgibacillus dokdonensis strain 21D     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978445..2990253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A21D_RS13470 (A21D_02748) spxA 2979935..2980330 (+) 396 WP_073010767.1 transcriptional regulator SpxA -
  A21D_RS13475 (A21D_02749) mecA 2980854..2981537 (+) 684 WP_077703101.1 adaptor protein MecA -
  A21D_RS13480 (A21D_02750) - 2982096..2983286 (+) 1191 WP_077703102.1 competence protein CoiA -
  A21D_RS13485 (A21D_02751) pepF 2983445..2985253 (+) 1809 WP_077703103.1 oligoendopeptidase F Regulator
  A21D_RS13490 (A21D_02752) - 2985418..2985603 (-) 186 WP_077703104.1 hypothetical protein -
  A21D_RS13495 (A21D_02753) - 2986324..2987214 (-) 891 WP_077703105.1 ClpXP adapter SpxH family protein -
  A21D_RS13500 (A21D_02754) - 2987232..2987615 (-) 384 WP_073010782.1 globin -
  A21D_RS13505 (A21D_02755) - 2987735..2988301 (-) 567 WP_077703106.1 CYTH domain-containing protein -
  A21D_RS13510 (A21D_02756) - 2988470..2989078 (+) 609 WP_077703107.1 GTP pyrophosphokinase -
  A21D_RS13515 (A21D_02757) - 2989282..2990088 (+) 807 WP_077703108.1 NAD kinase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69559.02 Da        Isoelectric Point: 4.6341

>NTDB_id=209085 A21D_RS13485 WP_077703103.1 2983445..2985253(+) (pepF) [Virgibacillus dokdonensis strain 21D]
MAKANKELPKRKELPVELTWRLEDIFETDEAWEQELTDLQKAIPEIENYQGTLGSSAKNLYDVLKLQDQLSERLGKLFTY
AHMRYDQDTTNSFYQRINAQAENVITVASSKMSYIVPEILEINEATLKQFLQEEEGLQVYQKTLDEITRQRPHILNKREE
AILAEASEPLGTASQTFGMLNNADLTFPSIKDENGEEVDVTHGRYIRFMESQDRSVRKAAFQAMYETYGAFKNTFASTLS
GNIKKDNFVAKVRNYESARQAALDNNHIPEKVYDNLVEAVNERLPLLHRYIQLRKKVLELDELHMYDIYTPLVRDVDMEI
TYEKAQQYVLEGLAPLGEGYLNIVKEAYDNRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVNDMFTLAHELGHSVH
SYYTRNNQPYRYGNYSIFVAEVASTCNEALLNDYLLKNLTDEKQKLYVLNHFLEGFRGTVFRQTMFAEFEHMIHVKQQQG
EALTAEKLTELYYDLNKKYYGDDVISDEEIGLEWARIPHFYYNYYVYQYATGYSAATALAQQILTEGDGAVERYTDFLKA
GSSEYPIEVLQKAGVDMNSKQTILDALDVFAEKLEQLEGLLK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=209085 A21D_RS13485 WP_077703103.1 2983445..2985253(+) (pepF) [Virgibacillus dokdonensis strain 21D]
ATGGCAAAAGCTAATAAAGAACTACCTAAAAGAAAAGAACTCCCTGTTGAATTAACATGGAGGTTAGAGGACATTTTTGA
AACGGATGAAGCATGGGAACAGGAATTAACAGATTTGCAGAAAGCTATTCCAGAAATTGAAAATTACCAAGGCACATTAG
GTTCCTCAGCGAAAAACCTTTATGATGTGTTAAAGCTTCAGGATCAATTATCGGAACGGTTAGGCAAGCTCTTTACATAT
GCACATATGCGTTATGATCAGGATACGACAAATTCATTTTATCAGCGGATAAATGCACAAGCAGAAAACGTTATCACGGT
TGCATCTAGTAAAATGAGCTATATTGTACCAGAGATTTTAGAAATTAACGAAGCTACATTAAAGCAGTTTTTGCAAGAAG
AAGAAGGTTTGCAAGTTTATCAAAAAACATTGGATGAAATCACTCGTCAGCGACCGCATATTTTAAATAAGCGCGAAGAG
GCCATTTTAGCTGAAGCTTCAGAGCCGTTAGGAACTGCTTCTCAGACGTTTGGTATGTTAAACAATGCAGATTTAACGTT
TCCATCAATTAAGGATGAAAACGGAGAAGAAGTAGATGTTACACATGGTAGATATATTCGCTTTATGGAATCACAAGATC
GTTCTGTACGGAAGGCAGCTTTTCAAGCGATGTATGAAACTTACGGTGCATTTAAAAACACATTTGCGTCGACATTGAGT
GGAAATATCAAAAAAGATAACTTTGTTGCAAAAGTAAGAAATTACGAATCTGCTAGACAAGCCGCACTTGATAATAATCA
TATTCCGGAGAAAGTGTATGATAATTTAGTTGAAGCAGTTAATGAACGTCTTCCGTTACTGCATCGATATATTCAATTGC
GTAAAAAAGTATTGGAATTAGATGAATTGCATATGTACGATATTTATACACCGCTTGTTCGTGATGTTGATATGGAAATA
ACCTATGAAAAAGCGCAGCAATATGTGCTTGAAGGCCTTGCTCCATTAGGAGAGGGGTATTTAAATATCGTGAAAGAAGC
GTACGATAATCGATGGATTGATGTAGAAGAAAATAAAGGAAAACGCAGTGGGGCTTATTCTTCAGGTGCTTATGGAACGA
ATCCTTACATTTTGCTGAATTGGCAGGATAATGTAAATGATATGTTTACTTTAGCTCATGAACTAGGGCATTCTGTTCAT
AGCTACTATACGCGAAATAACCAACCTTATCGTTATGGAAACTACTCTATTTTTGTTGCAGAAGTTGCTTCTACATGCAA
TGAAGCATTGTTAAATGATTACTTATTAAAAAATCTAACAGATGAAAAACAAAAGCTATACGTATTAAATCATTTTCTAG
AAGGATTTAGAGGAACTGTATTTCGTCAAACGATGTTTGCTGAGTTTGAACATATGATCCATGTAAAGCAACAGCAAGGA
GAAGCTCTAACTGCAGAAAAGCTTACTGAATTGTATTATGATTTGAATAAAAAATATTATGGTGATGATGTTATTTCTGA
TGAAGAAATTGGTCTGGAATGGGCGCGAATCCCTCACTTCTATTACAATTATTATGTATATCAGTATGCAACAGGATATT
CAGCAGCAACGGCCTTAGCGCAGCAAATTTTAACAGAAGGCGATGGAGCTGTGGAACGTTATACGGATTTTCTAAAAGCA
GGTAGTAGCGAGTACCCGATTGAAGTATTGCAAAAAGCTGGCGTAGATATGAATAGTAAACAAACGATTTTGGATGCATT
AGATGTGTTTGCTGAAAAACTGGAGCAATTAGAAGGTCTGCTTAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-587)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9J1H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.818

98.339

0.48

Multiple sequence alignment