Detailed information NTG0209066

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRT35_RS15490
• Genome accession: NZ_CP023844
• Coordinates: 3067775..3068767 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 4/1-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3062775..3073767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRT35_RS15470 (CRT35_16080)	ygbM	3063413..3064189 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
CRT35_RS15475 (CRT35_16085)	ygbN	3064278..3065642 (+)	1365	WP_000104433.1	GntP family transporter	-
CRT35_RS15480 (CRT35_16090)	-	3065785..3066828 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
CRT35_RS15485 (CRT35_16095)	-	3067053..3067604 (+)	552	WP_001179444.1	flavodoxin family protein	-
CRT35_RS15490 (CRT35_16100)	rpoS	3067775..3068767 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRT35_RS15495 (CRT35_16105)	nlpD	3068830..3069924 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
CRT35_RS15500 (CRT35_16110)	pcm	3070109..3070735 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRT35_RS15505 (CRT35_16115)	surE	3070729..3071490 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRT35_RS15510 (CRT35_16120)	truD	3071471..3072520 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
CRT35_RS15515 (CRT35_16125)	ispF	3072517..3072996 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRT35_RS15520 (CRT35_16130)	ispD	3072996..3073706 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=209066 CRT35_RS15490 WP_000081550.1 3067775..3068767(-) (rpoS) [Escherichia coli strain 4/1-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=209066 CRT35_RS15490 WP_000081550.1 3067775..3068767(-) (rpoS) [Escherichia coli strain 4/1-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715