Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A21D_RS03085 Genome accession   NZ_CP018622
Coordinates   662952..663905 (-) Length   317 a.a.
NCBI ID   WP_101932663.1    Uniprot ID   A0A2K9IWC3
Organism   Virgibacillus dokdonensis strain 21D     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 657952..668905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A21D_RS03065 (A21D_00628) - 658724..659449 (-) 726 WP_077706139.1 SurA N-terminal domain-containing protein -
  A21D_RS03070 (A21D_00629) - 660015..660974 (-) 960 WP_414930265.1 siderophore ABC transporter substrate-binding protein -
  A21D_RS03075 (A21D_00630) - 661263..662018 (-) 756 WP_077706141.1 ABC transporter ATP-binding protein -
  A21D_RS03080 (A21D_00631) - 662012..662962 (-) 951 WP_077706142.1 iron chelate uptake ABC transporter family permease subunit -
  A21D_RS03085 (A21D_00632) ceuB 662952..663905 (-) 954 WP_101932663.1 ABC transporter permease Machinery gene
  A21D_RS03090 (A21D_00634) - 664256..664981 (-) 726 WP_101932664.1 DsbA family oxidoreductase -
  A21D_RS03095 (A21D_00635) - 665406..666272 (-) 867 WP_077706145.1 MBL fold metallo-hydrolase -
  A21D_RS03100 (A21D_00636) fni 667035..668087 (-) 1053 WP_101932665.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35123.50 Da        Isoelectric Point: 9.9246

>NTDB_id=209065 A21D_RS03085 WP_101932663.1 662952..663905(-) (ceuB) [Virgibacillus dokdonensis strain 21D]
MKIRYLTIILIILSFVSIFVGVSNVSPLDIFQLTEEQAKVLMVSRVPRLLSILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSMVLFTSANPFEKILVSFAFALLGTFAFMKILEKVKFKDAIFIPLVGLMFGNIVSSMSTFIAYRYDLI
QNISSWMQGDFSMIMTGNYELMFVSIPILMIAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLIIVALVTASVVLAVGM
IPFLGLIIPNIVTIYQGDHLKKSLLHTALLGAIFVLICDIIGRIIIYPYEIPISLTVGVIGSGLFIYLLFRRKKYGI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=209065 A21D_RS03085 WP_101932663.1 662952..663905(-) (ceuB) [Virgibacillus dokdonensis strain 21D]
ATGAAAATACGATATCTAACAATCATATTAATTATACTTTCCTTTGTATCTATCTTTGTTGGTGTATCAAACGTTTCTCC
GCTAGATATATTTCAGCTAACGGAGGAGCAGGCAAAAGTATTAATGGTTTCAAGAGTTCCGAGACTTTTAAGTATTTTAA
TTGCTGGTATGAGCATGAGTATTTGTGGCTTAATTATGCAACAATTAAGCAGAAATAAATTTGTATCGCCAACAACGGCA
GGAACATTGGATTCCGCCAGACTTGGAATATTAGTATCCATGGTGTTATTTACCTCTGCGAATCCATTTGAAAAGATACT
TGTTTCGTTTGCTTTTGCTCTGTTAGGTACGTTTGCATTTATGAAGATACTGGAAAAAGTGAAATTTAAAGATGCGATAT
TCATCCCATTAGTTGGTTTAATGTTTGGAAATATTGTTAGTTCCATGTCTACCTTTATTGCTTATCGTTATGATTTAATT
CAAAACATCTCGTCATGGATGCAAGGAGATTTTTCCATGATCATGACAGGGAATTACGAGCTCATGTTTGTCAGCATTCC
GATATTGATGATTGCTTTCTTTTATGCAAATAAATTCACGATTGCTGGTATGGGTGAAGATTTTTCCAAAAACCTTGGAT
TAAACTATCGGCAAGTCGTTAATTTGGGACTGATTATCGTAGCACTTGTAACCGCATCCGTTGTATTGGCAGTAGGAATG
ATTCCATTTTTAGGATTAATTATTCCTAATATCGTAACTATCTACCAAGGGGATCATTTGAAAAAAAGTTTGCTACATAC
CGCATTGTTAGGTGCTATTTTCGTTCTTATTTGTGATATTATCGGCAGAATTATTATATATCCATATGAAATACCGATTA
GTTTAACGGTAGGGGTCATCGGTAGCGGATTATTTATTTATCTGCTCTTTAGGAGAAAAAAATATGGGATATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9IWC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.949

99.685

0.508

Multiple sequence alignment