Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LI610_RS09470 Genome accession   NZ_CP018614
Coordinates   1780205..1782007 (+) Length   600 a.a.
NCBI ID   WP_050890750.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii subsp. indicus strain JCM 15610     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775205..1787007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI610_RS09450 (LI610_09360) - 1776696..1777073 (-) 378 WP_050890747.1 hypothetical protein -
  LI610_RS09455 (LI610_09365) - 1777191..1778330 (-) 1140 WP_050890748.1 LCP family protein -
  LI610_RS10585 - 1778671..1779883 (+) 1213 Protein_1720 RNA-guided endonuclease InsQ/TnpB family protein -
  LI610_RS09470 (LI610_09380) pepF 1780205..1782007 (+) 1803 WP_050890750.1 oligoendopeptidase F Regulator
  LI610_RS09475 (LI610_09385) - 1782077..1782877 (-) 801 WP_418287618.1 alpha-hydroxy-acid oxidizing protein -
  LI610_RS11535 (LI610_09390) - 1783199..1783384 (-) 186 WP_050890751.1 hypothetical protein -
  LI610_RS11540 - 1783422..1783625 (-) 204 WP_231131962.1 hypothetical protein -
  LI610_RS11805 - 1783741..1784004 (-) 264 WP_394324510.1 zinc-ribbon domain-containing protein -
  LI610_RS09490 (LI610_09400) - 1784106..1784903 (-) 798 WP_050890752.1 metal ABC transporter permease -
  LI610_RS09495 (LI610_09405) - 1784903..1785556 (-) 654 WP_050890753.1 metal ABC transporter ATP-binding protein -
  LI610_RS09500 (LI610_09410) - 1785584..1786384 (-) 801 WP_050890754.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68235.07 Da        Isoelectric Point: 4.5040

>NTDB_id=209035 LI610_RS09470 WP_050890750.1 1780205..1782007(+) (pepF) [Lactobacillus delbrueckii subsp. indicus strain JCM 15610]
MEIPYRSEVPKEQTWDLTRVFKTEADWEAAFKAVKQEVKALPALEDGFTESAAVLYDRLTHIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRGQSLAAEYQAAVAFIQPAVLALGKEALDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVEVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVPITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYELLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKIRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIGLEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKDKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFAERLDEFTDLIKKL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=209035 LI610_RS09470 WP_050890750.1 1780205..1782007(+) (pepF) [Lactobacillus delbrueckii subsp. indicus strain JCM 15610]
ATGGAAATCCCTTATCGTAGTGAGGTTCCCAAAGAGCAGACCTGGGATTTGACCCGGGTCTTCAAGACTGAGGCGGACTG
GGAGGCCGCCTTTAAGGCAGTCAAACAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGTGCGGCCG
TCCTCTATGACCGCTTGACCCATATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTATGTCTATGCCAGCATGGCTAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGGCCAGAGCCTGGCCGCTGAATACCAGGCGGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGGAAAGAGGCCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAGGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGAGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACCGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGGCTACGGCCAGTTCGCGTCAACTTTTGCCTCAACCTTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAAGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTTGAAGT
CTACAACCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGCCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGGGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGAGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACCCTGGTCCACGAGACCGGACACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTACGGAGACTATCCGATTTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGACCGGGTGACGGATCCAAAGATCCGGGCCTTCCTGCTCAACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCAGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGCCCGGCGATCAGCCTGGGCAGCGACATCGG
CCTGGAATGGGCCCGGATCCCCCACTTCTATTACAACTTCTACGTCTACCAGTACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGACAAGTACCTGGACTTCCTTAAGTCCGGCTCCAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTCTTTGC
GGAAAGACTGGACGAATTTACTGACTTAATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-182)

Peptidase family M3 (Peptidase_M3)

(203-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

99

0.49

Multiple sequence alignment