Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BS467_RS17280 Genome accession   NZ_CP018574
Coordinates   3314187..3316292 (+) Length   701 a.a.
NCBI ID   WP_074042069.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GLB197     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309187..3321292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS17245 (BS467_17260) - 3309497..3309685 (+) 189 WP_003211747.1 YkvS family protein -
  BS467_RS17250 (BS467_17265) - 3309810..3310028 (-) 219 WP_025207245.1 hypothetical protein -
  BS467_RS17255 (BS467_17270) queF 3310287..3310784 (-) 498 WP_003211403.1 preQ(1) synthase -
  BS467_RS17260 (BS467_17275) queE 3310802..3311533 (-) 732 WP_008348085.1 7-carboxy-7-deazaguanine synthase QueE -
  BS467_RS17265 (BS467_17280) queD 3311526..3311966 (-) 441 WP_074042067.1 6-carboxytetrahydropterin synthase QueD -
  BS467_RS17270 (BS467_17285) queC 3311967..3312623 (-) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  BS467_RS17275 (BS467_17290) - 3312898..3313941 (-) 1044 WP_074042068.1 hypothetical protein -
  BS467_RS17280 (BS467_17295) clpC 3314187..3316292 (+) 2106 WP_074042069.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  BS467_RS17290 (BS467_17305) motA 3316857..3317651 (+) 795 WP_008346088.1 flagellar motor stator protein MotA -
  BS467_RS17295 (BS467_17310) motB 3317644..3318411 (+) 768 WP_019743067.1 flagellar motor protein MotB -
  BS467_RS17300 (BS467_17315) - 3318598..3319053 (-) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  BS467_RS17305 (BS467_17320) - 3319258..3320757 (+) 1500 WP_008346092.1 ATP-binding protein -
  BS467_RS17310 (BS467_17325) - 3320809..3321051 (-) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78178.89 Da        Isoelectric Point: 5.2973

>NTDB_id=209006 BS467_RS17280 WP_074042069.1 3314187..3316292(+) (clpC) [Bacillus altitudinis strain GLB197]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVMVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNVKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEKLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=209006 BS467_RS17280 WP_074042069.1 3314187..3316292(+) (clpC) [Bacillus altitudinis strain GLB197]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACGATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAAATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCCGTCATGGTTGATGAGCCAACACAGGATGAAGCATTCGAGATATTAAAAGGCATTCAAGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATCGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGTCAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACATTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGTCAAGGCAGAACCGTCAGCTTTAAAGACACAGTTATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTACCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAAGATCAAATGACGGACATCTTGCTTGAAGAAGAAAAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-245)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-685)

AAA lid domain (AAA_lid_9)

(253-353)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.969

100

0.601
  clpE Streptococcus mutans UA159

57.241

100

0.592
  clpE Streptococcus pneumoniae Rx1

55.846

100

0.579
  clpE Streptococcus pneumoniae D39

55.846

100

0.579
  clpE Streptococcus pneumoniae R6

55.846

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.846

100

0.579
  clpC Bacillus subtilis subsp. subtilis str. 168

53.949

95.72

0.516
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.244

90.585

0.428
  clpC Streptococcus thermophilus LMD-9

44.427

92.154

0.409
  clpC Streptococcus thermophilus LMG 18311

44.272

92.154

0.408
  clpC Streptococcus pneumoniae TIGR4

44.637

90.442

0.404
  clpC Streptococcus pneumoniae Rx1

44.833

89.729

0.402
  clpC Streptococcus pneumoniae D39

44.833

89.729

0.402
  clpC Streptococcus mutans UA159

44.444

89.872

0.399

Multiple sequence alignment