Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BS467_RS15170 Genome accession   NZ_CP018574
Coordinates   2893050..2893430 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GLB197     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2888050..2898430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS15135 (BS467_15145) - 2888639..2888869 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  BS467_RS15140 (BS467_15150) - 2888939..2889586 (-) 648 WP_017359583.1 YneB family resolvase-like protein -
  BS467_RS15145 (BS467_15155) yneA 2889604..2889915 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  BS467_RS15150 (BS467_15160) lexA 2890075..2890695 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  BS467_RS15155 (BS467_15165) - 2890743..2891186 (-) 444 WP_008343821.1 hypothetical protein -
  BS467_RS15160 (BS467_15170) - 2891483..2892025 (+) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  BS467_RS15165 (BS467_15175) - 2892058..2892906 (-) 849 WP_017359585.1 STAS domain-containing protein -
  BS467_RS15170 (BS467_15180) nucA/comI 2893050..2893430 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BS467_RS15175 (BS467_15185) - 2893658..2895652 (-) 1995 WP_060832359.1 glycosyltransferase family 39 protein -
  BS467_RS15180 (BS467_15190) - 2895799..2896707 (-) 909 WP_008343827.1 trypsin-like serine peptidase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=208998 BS467_RS15170 WP_224559893.1 2893050..2893430(-) (nucA/comI) [Bacillus altitudinis strain GLB197]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=208998 BS467_RS15170 WP_224559893.1 2893050..2893430(-) (nucA/comI) [Bacillus altitudinis strain GLB197]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment