Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BS467_RS13795 Genome accession   NZ_CP018574
Coordinates   2624904..2625539 (-) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain GLB197     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2619904..2630539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS13775 (BS467_13785) - 2620271..2620975 (+) 705 WP_007500879.1 DnaD domain-containing protein -
  BS467_RS13780 (BS467_13790) nth 2620993..2621655 (+) 663 WP_008344602.1 endonuclease III -
  BS467_RS13785 (BS467_13795) - 2621652..2622161 (+) 510 WP_019744018.1 YpoC family protein -
  BS467_RS13790 (BS467_13800) - 2622197..2624884 (-) 2688 WP_074041976.1 PBP1A family penicillin-binding protein -
  BS467_RS13795 (BS467_13805) recU 2624904..2625539 (-) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  BS467_RS13800 (BS467_13810) - 2625586..2626542 (+) 957 WP_017359732.1 DUF2515 domain-containing protein -
  BS467_RS13805 (BS467_13815) sspM 2626565..2626669 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  BS467_RS13810 (BS467_13820) - 2626866..2627099 (+) 234 WP_224558417.1 DUF5446 family protein -
  BS467_RS13815 (BS467_13825) - 2627149..2627529 (+) 381 WP_225310452.1 YppE family protein -
  BS467_RS13820 (BS467_13830) - 2627639..2628091 (+) 453 WP_008344618.1 YppG family protein -
  BS467_RS13825 (BS467_13835) - 2628113..2628532 (-) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  BS467_RS13830 (BS467_13840) - 2628701..2629207 (+) 507 WP_074041977.1 PTS sugar transporter subunit IIA -
  BS467_RS13835 (BS467_13845) - 2629257..2630375 (-) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=208997 BS467_RS13795 WP_017359733.1 2624904..2625539(-) (recU) [Bacillus altitudinis strain GLB197]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=208997 BS467_RS13795 WP_017359733.1 2624904..2625539(-) (recU) [Bacillus altitudinis strain GLB197]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment