Detailed information NTG0208988

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRT37_RS13740
• Genome accession: NZ_CP023834
• Coordinates: 2875597..2876589 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 4/2-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2870597..2881589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRT37_RS13720 (CRT37_14520)	otnK	2871372..2872634 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
CRT37_RS13725 (CRT37_14525)	ygbL	2872631..2873269 (+)	639	WP_001278994.1	aldolase	-
CRT37_RS13730 (CRT37_14530)	ygbM	2873274..2874050 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CRT37_RS13735 (CRT37_14535)	ygbN	2874139..2875503 (+)	1365	WP_000104441.1	GntP family transporter	-
CRT37_RS13740 (CRT37_14540)	rpoS	2875597..2876589 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRT37_RS13745 (CRT37_14545)	nlpD	2876652..2877746 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CRT37_RS13750 (CRT37_14550)	pcm	2877931..2878557 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRT37_RS13755 (CRT37_14555)	surE	2878551..2879312 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRT37_RS13760 (CRT37_14560)	truD	2879293..2880342 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CRT37_RS13765 (CRT37_14565)	ispF	2880339..2880818 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRT37_RS13770 (CRT37_14570)	ispD	2880818..2881528 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=208988 CRT37_RS13740 WP_000081550.1 2875597..2876589(-) (rpoS) [Escherichia coli strain 4/2-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=208988 CRT37_RS13740 WP_000081550.1 2875597..2876589(-) (rpoS) [Escherichia coli strain 4/2-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715