Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BS467_RS04440 Genome accession   NZ_CP018574
Coordinates   878631..879743 (-) Length   370 a.a.
NCBI ID   WP_035390152.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GLB197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873631..884743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS04425 (BS467_04440) gyrA 873665..876160 (-) 2496 WP_035390155.1 DNA gyrase subunit A -
  BS467_RS04430 (BS467_04445) gyrB 876394..878310 (-) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BS467_RS04435 (BS467_04450) remB 878368..878613 (-) 246 WP_008360920.1 extracellular matrix regulator RemB -
  BS467_RS04440 (BS467_04455) recF 878631..879743 (-) 1113 WP_035390152.1 DNA replication/repair protein RecF Machinery gene
  BS467_RS04445 (BS467_04460) yaaA 879760..879975 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  BS467_RS04450 (BS467_04465) dnaN 880126..881262 (-) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  BS467_RS04455 (BS467_04470) dnaA 881459..882799 (-) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  BS467_RS04460 (BS467_04475) rpmH 883420..883554 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  BS467_RS04465 (BS467_04480) rnpA 883633..883992 (+) 360 WP_008347592.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42601.67 Da        Isoelectric Point: 7.1297

>NTDB_id=208968 BS467_RS04440 WP_035390152.1 878631..879743(-) (recF) [Bacillus altitudinis strain GLB197]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLNLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=208968 BS467_RS04440 WP_035390152.1 878631..879743(-) (recF) [Bacillus altitudinis strain GLB197]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAACCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAACTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment