Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT43_RS24955 Genome accession   NZ_CP023826
Coordinates   4992122..4992598 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 4/4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4987122..4997598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT43_RS24925 (CRT43_25980) cah 4987243..4990089 (+) 2847 WP_021526504.1 calcium-binding autotransporter Cah -
  CRT43_RS24930 (CRT43_25985) - 4990160..4990355 (+) 196 Protein_4811 DUF905 family protein -
  CRT43_RS24940 (CRT43_25995) - 4990473..4991291 (+) 819 WP_001234738.1 DUF932 domain-containing protein -
  CRT43_RS24950 (CRT43_26005) - 4991633..4992106 (+) 474 WP_001350782.1 antirestriction protein -
  CRT43_RS24955 (CRT43_26010) radC 4992122..4992598 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  CRT43_RS24960 (CRT43_26015) - 4992661..4992882 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  CRT43_RS24965 (CRT43_26020) - 4993045..4993413 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRT43_RS24970 (CRT43_26025) - 4993503..4993880 (+) 378 WP_000854759.1 TA system toxin CbtA family protein -
  CRT43_RS24975 (CRT43_26030) - 4993877..4994365 (+) 489 WP_000761690.1 DUF5983 family protein -
  CRT43_RS24980 (CRT43_26035) - 4994382..4994558 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  CRT43_RS27625 - 4994664..4994813 (+) 150 Protein_4820 hypothetical protein -
  CRT43_RS28465 (CRT43_26040) - 4994783..4994917 (+) 135 Protein_4821 transcriptional regulator -
  CRT43_RS28345 - 4995180..4995485 (+) 306 Protein_4822 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=208946 CRT43_RS24955 WP_001186775.1 4992122..4992598(+) (radC) [Escherichia coli strain 4/4]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208946 CRT43_RS24955 WP_001186775.1 4992122..4992598(+) (radC) [Escherichia coli strain 4/4]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment