Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT43_RS20880 Genome accession   NZ_CP023826
Coordinates   4159841..4160509 (-) Length   222 a.a.
NCBI ID   WP_124800793.1    Uniprot ID   -
Organism   Escherichia coli strain 4/4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4154841..4165509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT43_RS20850 (CRT43_21740) rfaQ 4155018..4156076 (-) 1059 WP_000360408.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CRT43_RS20855 (CRT43_21745) waaA 4156490..4157767 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CRT43_RS20860 (CRT43_21750) coaD 4157775..4158254 (+) 480 WP_001171854.1 pantetheine-phosphate adenylyltransferase -
  CRT43_RS20865 (CRT43_21755) mutM 4158293..4159102 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CRT43_RS20870 (CRT43_21760) rpmG 4159200..4159367 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CRT43_RS20875 (CRT43_21765) rpmB 4159388..4159624 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CRT43_RS20880 (CRT43_21770) radC 4159841..4160509 (-) 669 WP_124800793.1 DNA repair protein RadC Machinery gene
  CRT43_RS20885 (CRT43_21775) coaBC 4160681..4161901 (+) 1221 WP_000050112.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CRT43_RS20890 (CRT43_21780) dut 4161879..4162337 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CRT43_RS20895 (CRT43_21785) slmA 4162444..4163040 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  CRT43_RS20900 (CRT43_21790) pyrE 4163077..4163718 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CRT43_RS20905 (CRT43_21795) rph 4163784..4164500 (-) 717 WP_001247093.1 ribonuclease PH -
  CRT43_RS20910 (CRT43_21805) yicC 4164627..4165490 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25358.47 Da        Isoelectric Point: 7.5149

>NTDB_id=208922 CRT43_RS20880 WP_124800793.1 4159841..4160509(-) (radC) [Escherichia coli strain 4/4]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTETRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=208922 CRT43_RS20880 WP_124800793.1 4159841..4160509(-) (radC) [Escherichia coli strain 4/4]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGAAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(10-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment