Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   b3638 Genome accession   NC_000913
Coordinates   3811891..3812559 (-) Length   222 a.a.
NCBI ID   NP_418095.4    Uniprot ID   P25531
Organism   Escherichia coli str. K-12 substr. MG1655     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3806891..3817559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  b3632 waaQ 3807064..3808098 (-) 1035 NP_418089.1 lipopolysaccharide core heptosyltransferase 3 -
  b3633 waaA 3808540..3809817 (+) 1278 NP_418090.1 KDO transferase -
  b3634 coaD 3809825..3810304 (+) 480 NP_418091.1 pantetheine-phosphate adenylyltransferase -
  b3635 mutM 3810343..3811152 (-) 810 NP_418092.1 DNA-formamidopyrimidine glycosylase -
  b3636 rpmG 3811250..3811417 (-) 168 NP_418093.1 50S ribosomal subunit protein L33 -
  b3637 rpmB 3811438..3811674 (-) 237 NP_418094.1 50S ribosomal subunit protein L28 -
  b3638 radC 3811891..3812559 (-) 669 NP_418095.4 RadC-like JAB domain-containing protein YicR Machinery gene
  b3639 dfp 3812731..3813951 (+) 1221 NP_418096.4 fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase -
  b3640 dut 3813929..3814387 (+) 459 NP_418097.2 dUTP diphosphatase -
  b3641 slmA 3814494..3815090 (+) 597 NP_418098.4 nucleoid occlusion factor SlmA -
  b3642 pyrE 3815127..3815768 (-) 642 NP_418099.1 orotate phosphoribosyltransferase -
  b3643 rph 3815863..3816549 (-) 687 YP_009518822.1 truncated RNase PH -
  b3644 yicC 3816676..3817539 (+) 864 NP_418101.1 putative RNase adaptor protein YicC -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=20886 b3638 NP_418095.4 3811891..3812559(-) (radC) [Escherichia coli str. K-12 substr. MG1655]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=20886 b3638 NP_418095.4 3811891..3812559(-) (radC) [Escherichia coli str. K-12 substr. MG1655]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P25531

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment