Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   b3541 Genome accession   NC_000913
Coordinates   3702865..3703848 (-) Length   327 a.a.
NCBI ID   NP_417998.1    Uniprot ID   P0AAG0
Organism   Escherichia coli str. K-12 substr. MG1655     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697865..3708848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  b3537 bcsF 3698026..3698217 (+) 192 NP_417994.2 putative cellulose biosynthesis protein BcsF -
  b3538 bcsG 3698214..3699893 (+) 1680 NP_417995.1 cellulose phosphoethanolamine transferase -
  b4453 ldrD 3699980..3700087 (-) 108 YP_026227.1 small toxic polypeptide LdrD -
  b3539 yhjV 3700563..3701834 (+) 1272 NP_417996.1 putative transporter YhjV -
  b3540 dppF 3701864..3702868 (-) 1005 NP_417997.1 dipeptide ABC transporter ATP binding subunit DppF -
  b3541 amiE 3702865..3703848 (-) 984 NP_417998.1 dipeptide ABC transporter ATP binding subunit DppD Regulator
  b3542 dppC 3703859..3704761 (-) 903 NP_417999.1 dipeptide ABC transporter membrane subunit DppC -
  b3543 dppB 3704771..3705790 (-) 1020 NP_418000.1 dipeptide ABC transporter membrane subunit DppB -
  b3544 dppA 3706098..3707705 (-) 1608 NP_418001.1 dipeptide ABC transporter periplasmic binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35844.36 Da        Isoelectric Point: 6.5814

>NTDB_id=20885 b3541 NP_417998.1 3702865..3703848(-) (amiE) [Escherichia coli str. K-12 substr. MG1655]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=20885 b3541 NP_417998.1 3702865..3703848(-) (amiE) [Escherichia coli str. K-12 substr. MG1655]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8Z1V
  PDB 8Z1W
  PDB 8Z1X
  PDB 8Z1Y
  PDB 8Z1Z

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404

Multiple sequence alignment