Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRI72_RS19085 Genome accession   NZ_CP023815
Coordinates   3827032..3827508 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain IMT16316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3822032..3832508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI72_RS19040 sbmC 3822524..3822997 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  CRI72_RS19045 yeeA 3823196..3824254 (+) 1059 WP_001200891.1 FUSC family protein -
  CRI72_RS19050 tmaR 3824426..3824755 (+) 330 WP_000450409.1 DUF496 family protein -
  CRI72_RS19055 - 3824856..3825038 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CRI72_RS19060 - 3825092..3825238 (+) 147 Protein_3526 transposase domain-containing protein -
  CRI72_RS26225 - 3825527..3825607 (-) 81 Protein_3527 hypothetical protein -
  CRI72_RS19065 yeeW 3825653..3825847 (-) 195 WP_000988599.1 DUF5983 family protein -
  CRI72_RS19070 - 3825909..3826217 (-) 309 Protein_3529 TA system toxin CbtA family protein -
  CRI72_RS19075 - 3826306..3826611 (-) 306 WP_044863316.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRI72_RS19080 yeeT 3826748..3826969 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CRI72_RS19085 radC 3827032..3827508 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CRI72_RS19090 - 3827524..3828003 (-) 480 WP_000860076.1 antirestriction protein -
  CRI72_RS19095 - 3828085..3828906 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  CRI72_RS19105 - 3829127..3829537 (-) 411 WP_000846713.1 hypothetical protein -
  CRI72_RS19110 - 3829553..3830236 (-) 684 WP_000775500.1 hypothetical protein -
  CRI72_RS19115 - 3830372..3831442 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CRI72_RS19120 - 3831439..3832344 (-) 906 WP_000203535.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=208765 CRI72_RS19085 WP_001186773.1 3827032..3827508(-) (radC) [Escherichia coli strain IMT16316]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=208765 CRI72_RS19085 WP_001186773.1 3827032..3827508(-) (radC) [Escherichia coli strain IMT16316]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment