Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CRI72_RS15480 Genome accession   NZ_CP023815
Coordinates   3080625..3081140 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain IMT16316     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3075625..3086140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRI72_RS15435 csrA 3076482..3076667 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CRI72_RS15465 yqaB 3077855..3078421 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CRI72_RS15470 yqaA 3078418..3078846 (+) 429 WP_001287454.1 YqaA family protein -
  CRI72_RS15475 gshA 3078919..3080475 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CRI72_RS15480 luxS 3080625..3081140 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CRI72_RS15485 emrB 3081204..3082742 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  CRI72_RS15490 emrA 3082759..3083931 (-) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CRI72_RS15495 emrR 3084058..3084588 (-) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CRI72_RS15500 ygaH 3084679..3085014 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  CRI72_RS15505 ygaZ 3085004..3085741 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=208754 CRI72_RS15480 WP_001130211.1 3080625..3081140(+) (luxS) [Escherichia coli strain IMT16316]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=208754 CRI72_RS15480 WP_001130211.1 3080625..3081140(+) (luxS) [Escherichia coli strain IMT16316]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment