Detailed information NTG0208751

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CRI72_RS15205
• Genome accession: NZ_CP023815
• Coordinates: 3030254..3031246 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain IMT16316
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3025254..3036246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRI72_RS15175	ispD	3025315..3026025 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CRI72_RS15180	ispF	3026025..3026504 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CRI72_RS15185	truD	3026501..3027550 (+)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
CRI72_RS15190	surE	3027531..3028292 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CRI72_RS15195	pcm	3028286..3028912 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CRI72_RS15200	nlpD	3029097..3030191 (+)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
CRI72_RS15205	rpoS	3030254..3031246 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CRI72_RS15210	-	3031367..3031774 (-)	408	WP_001208067.1	MarR family transcriptional regulator	-
CRI72_RS15215	-	3031921..3032515 (+)	595	Protein_2801	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CRI72_RS15220	-	3032515..3033942 (+)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CRI72_RS15225	-	3033953..3034189 (+)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CRI72_RS15230	pphB	3034230..3034886 (-)	657	WP_022646027.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=208751 CRI72_RS15205 WP_000081550.1 3030254..3031246(+) (rpoS) [Escherichia coli strain IMT16316]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=208751 CRI72_RS15205 WP_000081550.1 3030254..3031246(+) (rpoS) [Escherichia coli strain IMT16316]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715